Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01196 ATGGTGGTTTTGAGGGTACTTTTTTTGTCTCCTTTCTTCACAAAGGATATTGTTACAGATGGCAGAGATGAAGCGACGAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCCGAGTTTTCAAGGGTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAATTGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGACCTGATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTATCTTCTAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCGCAGCATCTCCTTCAGAAATCACACAATCGCGAAGACCAAACACAACAGCAGCAGCAGCAGCACACTTATCAAGATACTGTTTTACTTCAAAGTGATCAGCTGCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACAGTTTCTCCAGGACAAAATATGCTGAGTTCACTTTGTCCTGAAGGGAGTGGCAGTCTTTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAACAGTTACCCCAACAACCATGGGCCCCAAAGTTTACACCTTTGCAGGTCAATACTTTTGGCAACTCAATGCCCCATGTGCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACACTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACAGTCCCTCGTTATACCACCGCATCAGCTGATACTGATGCATCAGCAATGCCATTAGTGGAGTCTGGATTCCAAACTCCTCTATATCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAGTCAGGGTCGGTAGGGCGGTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTGAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 1440 0.4493 MVVLRVLFLSPFFTKDIVTDGRDEATNGLMWLRGGPGDQGLNSPSFQGSGLLPWMQQRMDPTLLGIDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQQQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTEQQLPQQPWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLVESGFQTPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01196 479 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 89 442 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu1g01196 479 Gene3D - 349 442 - -
Vimu1g01196 479 ProSiteProfiles PB1 domain profile. 353 437 IPR000270 GO:0005515
Vimu1g01196 479 FunFam Auxin response factor 348 442 - -
Vimu1g01196 479 MobiDBLite consensus disorder prediction 446 465 - -
Vimu1g01196 479 Pfam AUX/IAA family 350 437 IPR033389 -
Vimu1g01196 479 SUPERFAMILY CAD & PB1 domains 351 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01196 Vimu-Chr1 9312385 9314887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01196 20 450 B3 DNA Binding Superfamily AT5G37020 53.741 2.68e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu1g01196 AUX_IAA 4.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01196 - - gmx:100780393 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01196 1 9312385 9314887 Vimu1g01196 1 9312385 9314887 ECH
Vimu2g01937 2 14104877 14115551 Vimu1g01196 1 9312385 9314887 PCT