Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01195 ATGATTTTGAGATTTGATTTGGAGGTGCTTCTGGTTGAGTGTCTTGATGGTCAATCTTATTTAGTTTCTCAATTGAAAAGCAGTCAACTTTGCAGTGGAGCAGGTGATGATATTCTAGGGCCTCTTGGTGGTGGACAGCCAAAACGACACCTTCTTACAACTGGCTGGAGTGTATTTGTCAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGAAGAGCCAATAGACCGCAAACGGTCATGCCGTCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAGTAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATACATTAAAGCTGTGTACCACACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTACGCAGAGTTAGCAGCTGCATTCTGATGGAGTGGAAGCCAACTGCTAAGTGCTATTCTCTGGTAGGGTATTGTACTTTGGCCTATGATTTTCCTTTACTAATGCACAAGCCACCATTGTTTTGTAGGTATATGGGTACTATAACTGGCATAAGTGACCTGGATCCTGTTCGGTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGACAGCCAAGAGTTTCATTGTGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTGTTTCCTCTTAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGGTACATGTCTGCCTCAATACCGTTTTTCACTTTGA 891 0.4388 MILRFDLEVLLVECLDGQSYLVSQLKSSQLCSGAGDDILGPLGGGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATSSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRVSSCILMEWKPTAKCYSLVGYCTLAYDFPLLMHKPPLFCRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHGTCLPQYRFSL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01195 296 Gene3D - 151 263 - -
Vimu1g01195 296 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
Vimu1g01195 296 Pfam Auxin response factor 211 236 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu1g01195 296 Pfam Auxin response factor 113 176 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu1g01195 296 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 282 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu1g01195 296 SUPERFAMILY DNA-binding pseudobarrel domain 45 116 IPR015300 -
Vimu1g01195 296 Gene3D - 21 88 IPR015300 -
Vimu1g01195 296 FunFam Auxin response factor 209 263 - -
Vimu1g01195 296 Pfam B3 DNA binding domain 46 88 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01195 Vimu-Chr1 9308727 9311953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01195 45 286 B3 DNA Binding Superfamily AT1G30330 77.686 1.27e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu1g01195 Auxin_resp 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01195 - - gmx:100780393 378.637