Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01193 ATGATGATAGGAGGGGAAAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGTCACATACCCAATTACCCCAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGTGGGTATTATACCTTCCGTGTTGCTTGCTATGATAGTTGAGTTACTTCTACCTCCCACTAGAGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGGGGTAAGGATTTATTTCTTCGACATATTCTTATAGGACTAGTTCCACTAAGTTGA 639 0.4617 MMIGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHVGIIPSVLLAMIVELLLPPTRADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKDLFLRHILIGLVPLS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01193 212 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 198 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu1g01193 212 Gene3D - 136 206 IPR015300 -
Vimu1g01193 212 CDD B3_DNA 137 198 IPR003340 GO:0003677
Vimu1g01193 212 SUPERFAMILY DNA-binding pseudobarrel domain 122 200 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01193 Vimu-Chr1 9301985 9303011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01193 3 205 B3 DNA Binding Superfamily AT1G30330 75.862 7.06e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g01193 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01193 - - gmx:100784804 352.058