Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01180 ATGGAGCAGGAAAAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCAGACTCATCACCACCCACCAATCAACCTCAACACTCTCCTTCCTCATGTTTGGGTTCTTCTTTATGTGTCGCTCATTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAAGGGGGAAATCGTTCTCAGAGTTCCAAAATCTGCTTTAATGACAAGAGAGAGTGTTATGGAAGATGAAAAGCTCTGTTTTGCTGTCAGTAGACACTCTTGTCTCTCCTCAGCTCAGGTAAATAACTATCGGTGCATTGTAGAACTTGGCTCTGAACACCTATTTGGATATGGCTTCATCATCATTGTATTGATCGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCATGCATTTGCCACAGACATATGACATACTAGCGATGTTTGGTGAATTTGAGAAGCGTGCTCTGCAAGTGGATGAAGCTGTGTGGGTCACGGAAAAAGCTATACTAAAGGCCAAATCGGAGTGGAAAGAAGCTCTTGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTAACATTAAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATATACCATGGGATGAAGCCGGATGTTTATGCCCTGTGGGTGATTTGTTTAATTATGATGCACCTGGAGAGGAGTCATCTGACATTGAGGGTTTAGAACATTTGCCATCAAACTCTTCCATTCACGATTCAAACTTATTTAATGGAGGCAAGAATATAATGGTAGATGCAGAACAATTTGATTCTCGTTCTCAAAGATTAACTGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTCTATGCTAGAGCACATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTACGGCTTTCTCCTGCAAGAAAATCCAAATGACAAGGTTTTTATCCCTTTGGAACCAGCTATATATTTTTCCACTTCATGGTCTATGGAATCACTCTATATCCATCATAATGGGAAGCCTTCATTTTCGCTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAACAAAAGGAAGTCTGTCGGGCATCTTGTGTATTCTGGTTCCCAACTGTCGGCAGACAATGAAATTTTCATCACGAAATGGCTGTCCAAAACTTGTGCGACTGTGTTAAAGAATCTGCCGACATCTATTGATGAAGACACCTTGCTCTTGAATGCAATGCACAGCAGCCAAGATTTTTTCACTTTCATGGAGATCACAAAACCTATGTCTTGCAGGGAGGAGATCTATACCTTTTTAGATGCACATGATATGAAAGATGCACATAATTTCACTGGCGTAATATTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAAATTAGCTGTCCAATGGAGACTGAAGTATAAGAAAGTCCTTTCTGATTGTATCTCTTATTGCAATGAAATACTAGATTCTTTCATAAAATAA 1563 0.4095 MEQEKQNLESFLTWAAQLGISDSSPPTNQPQHSPSSCLGSSLCVAHFPHSGGRGLGAVRDLRKGEIVLRVPKSALMTRESVMEDEKLCFAVSRHSCLSSAQVNNYRCIVELGSEHLFGYGFIIIVLIVCLLYEMGKGKTSRWHPYLMHLPQTYDILAMFGEFEKRALQVDEAVWVTEKAILKAKSEWKEALALMEDLMFRPQFLTLKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEESSDIEGLEHLPSNSSIHDSNLFNGGKNIMVDAEQFDSRSQRLTDGGFEEDVNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPAIYFSTSWSMESLYIHHNGKPSFSLLAALRLWATPQNKRKSVGHLVYSGSQLSADNEIFITKWLSKTCATVLKNLPTSIDEDTLLLNAMHSSQDFFTFMEITKPMSCREEIYTFLDAHDMKDAHNFTGVILSRKARRSMDRWKLAVQWRLKYKKVLSDCISYCNEILDSFIK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01180 520 Gene3D - 352 518 IPR036464 -
Vimu1g01180 520 CDD SET_LSMT 41 333 - -
Vimu1g01180 520 Gene3D set domain protein methyltransferase, domain 1 4 333 - -
Vimu1g01180 520 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 513 IPR036464 -
Vimu1g01180 520 Pfam SET domain 52 319 IPR001214 GO:0005515
Vimu1g01180 520 FunFam Protein SET DOMAIN GROUP 40 119 333 - -
Vimu1g01180 520 SUPERFAMILY SET domain 7 337 IPR046341 -
Vimu1g01180 520 ProSiteProfiles SET domain profile. 40 319 IPR001214 GO:0005515
Vimu1g01180 520 Pfam Rubisco LSMT substrate-binding 368 504 IPR015353 -
Vimu1g01180 520 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01180 Vimu-Chr1 9159527 9163095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01180 52 355 NAC Transcription Factor Family AT3G56570 22.380 8.40e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu1g01180 SET 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01180 - - gmx:100787452 850.892