Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01174 ATGGCACCTGTTTTGCCTCCTGGTTTTAGGTTCCATCCTACTGACGAAGAACTCGTTGCTTATTACCTTAAAAGGAAGATCAATGGCCGAAAGATTGAGTTGGAAATCATTCCAGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTACCAGGGAAATCATTGTTACCGGGGAAGGATTTGGAGTGGTATTTCTTTAGCCCTCGTGACAGAAAATACCCAAATGGATCAAGAACAAACCGAGCAACAAAATCTGGGTATTGGAAAGCAACAGGGAAGGATAGAAAGGTAAATTCGAAGGCTCGTTCTGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGAACAAATTGGGTTATGCATGAATATCGTCTTGATGAGACAGAATGCGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTGAAGAAGAGTGCAGTGATTCCTCAAAAAGTTGAGGGGCACTATGTTAATGTTCCCAATGTCAATCAGATTACAAGCGATCAATCATCGAGCATTGAACTATACTCTGAAGGAAGGGGAGAAGATTTAGTAGATAGCTCTAATTATTTTATGTCTGTGGATACTTGTTCACCACACAATGTTGGAACTGAGACTCCTCTCACTATAAGTGGTGGAACCACAATGGATCATGAAAAATGGTCACACTTTTCATCACAAGATTCAATATTTAGTCTTCCAACTTCTTCATATCCTAATTTTGGAGCCATAGCATACCCTCCATCCAAGGTAGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGTTATGCCCCCTTTGGAAGTGGATGACTTCCCTCAAGTTGGAATCTCTGAGCTGAAAATGACACAAGCTTCTAGTTCCATGCAAGGAAGCAGAACTGAAACAGATATCTTACAGGAAATTCTTTCAGTGGCTCAGGCCTCTCAGGAATTAATAAATCAATCCAACTACTCACAGGAATGGTGTGGCAATGATTATTATGCTCCTCGTGATGACGATTTTGCCTTCATGGTTGGCACTAATTACAATCATTCAAATGAAATAATGAACTCAGTGAGGTATGTTGACAAAGCATGGGAAGATGCAAACACAAGGACAATAGAGATCGGAGATATGGATGAAGAATTTAAGGTGGAGAGGAATGTAGAGAATTTAAGATGGGTCGGAATGTCAAAAGAAGATTTAGAAAAGATGGAAGAACAAAATATTGTCCCAATAGAGGATATTTCAAGCTTCCAAACTAAGATGAAAGAAAATGAGGTGCAAGAATCTGAGCAGCACAGTAACATGGAACATAATGGTACTGAAATAAATGATTTCTCATTGGGTTTCATCAATGATGACGACTCTACAGAGAAGTTGACAGAAGATGGTAACAAGGATGATTATTCAAGTTCTCCTAGTTTTGAGGTTGTCGAGGAAATAAAGGTTAATCGTGGAATGTTTGTTTCGACTCGTCAAGTGGCGGAGACATTCTTCCAGCAAATGGTTCCTTCACAAACAGTCCAAGTTCAGCTTAATACAGTGATGGCACACAATCATTACGTAGAGAATGCAGAAGCAATGGTGTTGATAATGGAGGACCAAGGATCTTTAAGGAAGGTTAAGGCCTATGTGATGGGGAAGCTAATAAAGCCATCAATGACAATAGCAAGTGTGATTGTATTCGTCTTTGCACTTGTGCTTATGCACTATGCTTTTATAAAGGGAGAAGTGAAATTTTGGAATGAGACATGTTGCAGTAACAGTGATAACATCATGAAGAAAACGAATCAATCATGTCAGATAATGAATGAGTCAAATGATGTTTGGTTTATTGGTATCAAAAGTGGAAAAGGTTTAAATGCAGTGTTGAAGAAAATAGGCATTTTTCTGACTATATTCTTCGTTCTTTGTGCCATGTGGGCTAACCATAGTTGA 1962 0.396 MAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSKARSVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDETECETASGLQDAYALCRVLKKSAVIPQKVEGHYVNVPNVNQITSDQSSSIELYSEGRGEDLVDSSNYFMSVDTCSPHNVGTETPLTISGGTTMDHEKWSHFSSQDSIFSLPTSSYPNFGAIAYPPSKVDIALECARMQHRFVMPPLEVDDFPQVGISELKMTQASSSMQGSRTETDILQEILSVAQASQELINQSNYSQEWCGNDYYAPRDDDFAFMVGTNYNHSNEIMNSVRYVDKAWEDANTRTIEIGDMDEEFKVERNVENLRWVGMSKEDLEKMEEQNIVPIEDISSFQTKMKENEVQESEQHSNMEHNGTEINDFSLGFINDDDSTEKLTEDGNKDDYSSSPSFEVVEEIKVNRGMFVSTRQVAETFFQQMVPSQTVQVQLNTVMAHNHYVENAEAMVLIMEDQGSLRKVKAYVMGKLIKPSMTIASVIVFVFALVLMHYAFIKGEVKFWNETCCSNSDNIMKKTNQSCQIMNESNDVWFIGIKSGKGLNAVLKKIGIFLTIFFVLCAMWANHS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01174 653 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 296 - -
Vimu1g01174 653 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vimu1g01174 653 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Vimu1g01174 653 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Vimu1g01174 653 FunFam Nac domain-containing protein 86 14 158 - -
Vimu1g01174 653 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Vimu1g01174 653 MobiDBLite consensus disorder prediction 436 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01174 Vimu-Chr1 9066573 9070505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01174 1 577 NAC Transcription Factor Family AT1G65910 47.952 3.91e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g01174 NAM 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01174 - - vum:124843561 1075.08