Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01168 ATGCAGGGCAAAAGTGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGCAGATGAAATATGTTTGAGTCCCGGTGTTGCAGATATTCCACTACATGATCAGTTTTCTTTTGGAAATGACTATGCCTTGAAGGTAAGAAAACCGTATACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGAAGGATTGAAGAACATGTCGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGTCTAGTGGGAACAGCACAGCCTTGGAGGAATCAATTGAAATTCCACCCCCACGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACATCTTCTGAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCTAAGTCAGTGTTATCTACTGTTGTTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACTGGAAGTTTGTCACCAGTCTCATCCATTAGCGGTGTCCTCACAAACAGATTTCCACTAGCTCAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCAGCTCATGATGAGCAACATCTCGTGAAACTGAAGCTTTTTCACAAAGAAACTGTTTCTACCAAAGATGATGCAACTGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTGGTAACAGATACAAGCAAACCCTTTTCTCTAATAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATGTTATGCAACTTCAAAATGGGTGTTCGGATCTTGCAGAAGGTCCTATTGTTCCAAGGTGGAGTTTTTCCCATAACGCACTATCTGAGCTAAAAGGGAAACACCTATACTCTAATCTTGGAGATTTTGAACATAAAGAGGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAGTTAATGATGGAGAGAACACTGCAGCAAGTGAAACATCAGGTATATTTGAGCTAAGGGTGAGAGCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCATCAGTTTGTGACGAGGAGAGAGAAGAGCAACGTGTCAAGCTTTCCTTATAG 1212 0.4224 MQGKSAFTRSRGGPPIADEICLSPGVADIPLHDQFSFGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRESSGNSTALEESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSEHLLRSNSLKSSDFGQENNSPKSVLSTVVSENLGSSDSDTPTGSLSPVSSISGVLTNRFPLAQPKTSFEEEGSLPSSAHDEQHLVKLKLFHKETVSTKDDATEESCGRTLKLFGTTLLVTDTSKPFSLITEPFKPIPAAATYVMQLQNGCSDLAEGPIVPRWSFSHNALSELKGKHLYSNLGDFEHKEVQKEGSWTGSNTSSVNDGENTAASETSGIFELRVRAKTCGKGFVPYKRCMASVCDEEREEQRVKLSL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01168 403 PANTHER SWI/SNF COMPLEX-RELATED 39 348 - -
Vimu1g01168 403 MobiDBLite consensus disorder prediction 339 358 - -
Vimu1g01168 403 MobiDBLite consensus disorder prediction 178 197 - -
Vimu1g01168 403 CDD SANT 57 100 IPR001005 -
Vimu1g01168 403 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Vimu1g01168 403 ProSiteProfiles SANT domain profile. 53 104 IPR017884 -
Vimu1g01168 403 SMART sant 54 102 IPR001005 -
Vimu1g01168 403 MobiDBLite consensus disorder prediction 341 358 - -
Vimu1g01168 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Vimu1g01168 403 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Vimu1g01168 403 MobiDBLite consensus disorder prediction 120 139 - -
Vimu1g01168 403 Gene3D - 57 104 - -
Vimu1g01168 403 SUPERFAMILY Homeodomain-like 49 103 IPR009057 -
Vimu1g01168 403 FunFam protein REVEILLE 6 isoform X1 57 105 - -
Vimu1g01168 403 Pfam Myb-like DNA-binding domain 55 98 IPR001005 -
Vimu1g01168 403 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01168 Vimu-Chr1 9024730 9028229 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g01168 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01168 - - gmx:778060 607.831