LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01158	ATGTCGCATCTTTCAACGCTCTTTATGTTTGCCTTCTTCAATTTCGTAGCTGCAACCACCGAGTTCGACTTTGGGACTTTAACATTGGGAAGCCTCAAGCTTCTCGGGGACGCTCACTTTAACAACGGCACCGTAAGCCTCACGCGCGACCTCGCCGTTCCGACCTCCAGCGCCGGCAGAGCTCTTTACTCCCGTCCGGTTAGGTTCCGCCTTCCCGGTAACCGCTCTCCGGCCAGCTTCACCACCTTCTTTTCCTTCTCCGTCGCCAACCTCAACCCATCCTCCATCGGCGGCGGCCTCGCCTTCGTCCTTGCGCCGGACGATGAAACGATCGGCGATGCCGGTGGATTTCTTGGACTTAGCGCAGCCGCCGCCGCCGCGGATGGCGGCGGCGGCGGGTTTATTGCCGTGGAGTTTGATACGCTTATGGACGTAGAGTTTAAGGACATTAATGGGAACCACGTTGGGGTGGACTTAAACAGCGTCGTTTCGAGCGAGGTTGGTGATTTGGAGAGCGTTGGGATCGATCTGAAGAGCGGTGACCTAATTAACGCGTGGATTGAGTTCGATGGATCGAGCAAAGGGTTAAGCGTGTGGGTTTCGTATTCCAATTTGAAACCGAAAGATCCCGTTTTGTCGACGAGCCTCGATGTGGATAAGTATTTGAGTGATTTTATGTATGTGGGGTTCTCAGGTTCTACGCAGGGTAGCACAGAGATTCACAGAATAGAGTGGTGGAGTTTTGGTTCTTCTTTTGATGTTGCGGCAGGGGCGGCCCCACCGCCTCCGCCGGCGACGAGTCTGATGAACCCGACGGCGAATGTGGTGAAGTCGGCGCCTCCTTCTCCGGCTCCTTCTAACAGTGAAGAGAAAGAGAGCAAAAGCAAATCGTCTTGCCACAATGGGTTGTGTAAGCAGAATTTAGGAGCGGTTGCTGGTGTTGTTAGTGCCGGGGCTTTTGTTTTGGCTATTTTTGCCGGTGCATTGATTTGGTTTTACTCTAAGAAGGTTAAGCGTGTTAACAAGTTTGATTCGCTTGGTCCGGAGATCATTAAAATGCCGAAGCAGTTTACCTACAAGGAGCTGAAGTCTGCTACAAAGTGTTTCAATGCGAATAGGATCATTGGTCATGGTGCGTTTGGGACTGTGTATAAGGGGGTTTTGGCTGAAAACGGGGACACTGTTGCGGTGAAGAGGTGCAGCCATAGTAGTCAGGGGAAGAATGAATTTTTGTCTGAGTTGTCTATCATTGGGAGCCTGAGGCATCGGAATCTGGTTCGGCTTCAAGGGTGGTGCCATGAAAAAGGGGAGATTCTGCTGGTGTATGACTTGATGCCCAATGGGAGTTTGGACAAGGCTTTGTTCGAGGCTAGGACAACTCTTCCATGGTCTCACCGGCGCAAGATTTTGTTGGGCGTGGCCTCTGCCTTGGCCTACTTGCATCAAGAGTGTGAGAATCAGGTGATTCACAGGGACATCAAGACTAGTAATATAATGTTGGATGAAGGGTTCAATGCCAGATTGGGAGATTTTGGTTTGGCGAGGCAAACGGAGCATGATAAGTCGCCGGATGCAACCGTGGCTGCTGGGACAATGGGGTACCTAGCACCCGAGTATCTCCTTACAGGAAAGGCTACAGAGAAAACTGATGTGTTCAGCTATGGCGCAGTGGTTCTTGAGGTGGCAAGTGGGAGAAGACCGATAGAGAGGGATGGGAATGGAGGTGGTAAAGGTGGAATTAGCTGCAATTTGGTAGAATGGGTATGGAATTTGCACCGGGAAGGAAGGTTGCAGTTGGCGGCTGATGCAAGGCTTGAAGGGGAGTTTGATGAGGCGGAGATGAGGAGGGTACTGTTGGTTGGGTTAGCTTGCTCTCACCCTGATCCATTGGCTAGACCTACTATGAGGGGTGTGGTTCAGATGCTGGTGGGGGAAGCTGAAGTGCCTATTGTTCCAAGAACCAAGCCTTCCACAGGTTTCAGTACTTCCCACTCTTACTTACTGATGAGCTTGCAAGATAGTGTATCTGACTGTGATGGTATAATCACCATCTCTACATCTACATCAGAGAACAGCTTCAATCTTGGAGATATAGTCTGA	2100	0.5095	MSHLSTLFMFAFFNFVAATTEFDFGTLTLGSLKLLGDAHFNNGTVSLTRDLAVPTSSAGRALYSRPVRFRLPGNRSPASFTTFFSFSVANLNPSSIGGGLAFVLAPDDETIGDAGGFLGLSAAAAAADGGGGGFIAVEFDTLMDVEFKDINGNHVGVDLNSVVSSEVGDLESVGIDLKSGDLINAWIEFDGSSKGLSVWVSYSNLKPKDPVLSTSLDVDKYLSDFMYVGFSGSTQGSTEIHRIEWWSFGSSFDVAAGAAPPPPPATSLMNPTANVVKSAPPSPAPSNSEEKESKSKSSCHNGLCKQNLGAVAGVVSAGAFVLAIFAGALIWFYSKKVKRVNKFDSLGPEIIKMPKQFTYKELKSATKCFNANRIIGHGAFGTVYKGVLAENGDTVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTTLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIERDGNGGGKGGISCNLVEWVWNLHREGRLQLAADARLEGEFDEAEMRRVLLVGLACSHPDPLARPTMRGVVQMLVGEAEVPIVPRTKPSTGFSTSHSYLLMSLQDSVSDCDGIITISTSTSENSFNLGDIV	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01158	699	CDD	STKc_IRAK	375	642	-	-
	Vimu1g01158	699	Pfam	Protein kinase domain	370	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01158	699	MobiDBLite	consensus disorder prediction	259	297	-	-
	Vimu1g01158	699	SUPERFAMILY	Protein kinase-like (PK-like)	351	668	IPR011009	-
	Vimu1g01158	699	CDD	lectin_legume_LecRK_Arcelin_ConA	20	252	IPR001220	GO:0030246
	Vimu1g01158	699	SMART	serkin_6	369	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01158	699	FunFam	L-type lectin-domain containing receptor kinase VIII.1	18	260	-	-
	Vimu1g01158	699	SUPERFAMILY	Concanavalin A-like lectins/glucanases	18	253	IPR013320	-
	Vimu1g01158	699	PANTHER	-	43	652	-	-
	Vimu1g01158	699	FunFam	L-type lectin-domain containing receptor kinase VIII.1	445	660	-	-
	Vimu1g01158	699	FunFam	L-type lectin-domain containing receptor kinase VIII.1	333	444	-	-
	Vimu1g01158	699	Gene3D	Transferase(Phosphotransferase) domain 1	445	648	-	-
	Vimu1g01158	699	Gene3D	Phosphorylase Kinase; domain 1	333	444	-	-
	Vimu1g01158	699	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	488	500	IPR008271	GO:0004672\|GO:0006468
	Vimu1g01158	699	ProSiteProfiles	Protein kinase domain profile.	369	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01158	699	Gene3D	-	17	259	-	-
	Vimu1g01158	699	ProSitePatterns	Protein kinases ATP-binding region signature.	375	398	IPR017441	GO:0005524
	Vimu1g01158	699	MobiDBLite	consensus disorder prediction	269	288	-	-
	Vimu1g01158	699	Pfam	Legume lectin domain	21	254	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01158	Vimu-Chr1	8905209	8907308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01158	8	681	Receptor kinase-like Gene Family	AT3G53380	68.613	0.0	921

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu1g01158		Pkinase	4.9e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01158	-		-	gmx:100793157	1160.59