Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01150 ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCCTCTTCCTTAATTTCCAATACCAACAACATCGCCAATTATGAACCCCAACCTAGTTTCCTTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTCGGAAGAAATTTCACTTCGGCAAGGGAAACACCGGCACCAACACCAACTCCAACACCACACAACCCTTATTATCCATCCCAAACCCATTTCCATCATCTTCTCCACTCCAGCAGCAGCAGCACTACTACTAGTAGTAATATTCCAACAAGTGTTCCTACAAGTGCCAACACTCCCTTGAATCACATAAACTATGGAGTTTCGTTGCTTGATGTATCATCATCAGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCTCATACCAAGATGTGCTTATATCATCACATGCCTTCTTACCCCTCTCTCTCTTCCTCGTGTTCCTCTCTGTGCTCCACAACCGCTCCTTCTTCTTCACCTTCGCCTTACTTCGTGGATCCCATGTCCTTCTTGAACAACGCTTCCACCGTGGGGTGTAGAACAGCCACTGCCACAAGGTTTAATGGGTTTTCCGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCAGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTTGAACTTCTCGGAGGGCATGAAACAGGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGACTTATCTCCTATTGGCAGCACCGCAGATCGGGGCAGTCTCCGGCAATTTCCCAGCCACAGAGGGCGGCCGGATTGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGTTGTGGAGAATCGCGACAAAGAACAACTTCTAACGACATAGATGGCCTGAGATCACCTATTCTCCAGTCACAAACAATATCAGGAGCTCATCAAATTCAGGAGTGTGATTCAACACAACAGAAGAACAACATGGGAGTTTCTAATTTGGAGTGCAAGAATCCAAGCTTGGAATTCACATTAGGAAGACCACATTGGGATGGCAAAGAGCAAGCGTAA 1389 0.4723 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNTNNIANYEPQPSFLSRTVSQAHTELSLGRNFTSARETPAPTPTPTPHNPYYPSQTHFHHLLHSSSSSTTTSSNIPTSVPTSANTPLNHINYGVSLLDVSSSDGLRPIKGIPVYHNRSFPFVAMDHARDNKDPHTKMCLYHHMPSYPSLSSSCSSLCSTTAPSSSPSPYFVDPMSFLNNASTVGCRTATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHETGATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPIGSTADRGSLRQFPSHRGRPDWVAQQDMDYSSTTTLWSNSSSCGESRQRTTSNDIDGLRSPILQSQTISGAHQIQECDSTQQKNNMGVSNLECKNPSLEFTLGRPHWDGKEQA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01150 462 SUPERFAMILY Homeodomain-like 268 325 IPR009057 -
Vimu1g01150 462 Gene3D - 270 328 - -
Vimu1g01150 462 MobiDBLite consensus disorder prediction 62 89 - -
Vimu1g01150 462 MobiDBLite consensus disorder prediction 375 406 - -
Vimu1g01150 462 FunFam Myb family transcription factor 269 328 - -
Vimu1g01150 462 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 460 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu1g01150 462 MobiDBLite consensus disorder prediction 329 406 - -
Vimu1g01150 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 271 325 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01150 Vimu-Chr1 8805789 8810579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01150 1 459 G2-like Transcription Factor Family AT5G16560 39.053 3.88e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu1g01150 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01150 - - gmx:100796325 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01150 1 8805789 8810579 Vimu1g01150 1 8805789 8810579 ECH
Vimu6g01883 6 17033042 17038054 Vimu1g01150 1 8805789 8810579 PCT