Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01148 ATGGCAAGTTTGTTATTATTGATCTGCGGTGTAATGCTGGCTCTCAATAACAACCTCAACCCACAGGGATGGACCGGCCCGGACCCATGCAAGTGGGACCACGTCAAGTGCTCCGAAGATAAACGGGTCACCCGGATCCAAATCAGCCGCCTCAATCTCCAGGATAAGAGTAGCATGTCCCCTCAGGGTTCAGTAAGGGTTAGCATGTCCCCTCAGAGTTCAATAGGGCTTCTTCCTATGGAGGAGGAAAGAGAACGGAGTTTTTATATTTATGAGGAAAAGGATTCCCATGTGCTAGATGTCGTGTTTCCGGTGATTGGGGCGGTTTTTGTGGTTTCTATAATTGGTTTCCTGATTTTCCGCCAGTTTAGGATGAAGCAAAAGTTGAGCATGCTCCAAAACAGTGTTGGTGTTGGTGGTGTTAGTGAAGCGCGAAACAAACTTAACAGTGAGGCAGGAGATATCCAAATGGTTGAAGCTGGAAAAATGGTTATTTCGATAGAAGTTATGAGGAATGCCACGGACAACTTCAATGAAAAGAACATATTGGGAAAAGGAGGTTTTGGAACTGTTTATAAAGGTGAACTCCATGATGGTTACTGTTTAGACGGGAATGGGAAGCTGCTTGTTTACGAGCTCATGCCTCAAGGAACATTGAGTAGGCATCTTTTCAACTGGTTAGAAGAAGGACTGGAACCACTGGAGTGGAACACAAGATTGATGATTGCTTTAGATGTGGCAAGGGGTAAGGAAAAGCCTCTAGAGACAAACATTGCAGGAACTTATGGATACTTGGCACCAGAGTATGCAGTGATTGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATAACAGGAAGAAAAGCACTTGATAAGACTCAATCCGAGGATAGTATGCTCTTAGCAACATGGTTCTGCAGAATGTCGATAAATAAAGACTCATTCCACAAGACCATTGACTCCACCATTGATCTCAACGAGGAAACTCTTGCCAGTATTCACACTGTTGCAGAGTTAGCTGGCCACTGTTGTGCCAGGGAGCCAGATCAAAGGCCTGACATGGGTCATATTGTCAACGTGCTTTCTTCTCTTGTTGAATTCTGGAAACCATCTGATCAGAATTCTGAAGATATATATGACATTGACCATGACATGTCTTTGTCACAAGCACTTAAGAAGTGGAAGGCTAAAGGTAAAAGTATAATGGAGTCCTCTTCTTCATATTCGCTTCTACCTAGCTTGGATAACACGGATACATAA 1284 0.4377 MASLLLLICGVMLALNNNLNPQGWTGPDPCKWDHVKCSEDKRVTRIQISRLNLQDKSSMSPQGSVRVSMSPQSSIGLLPMEEERERSFYIYEEKDSHVLDVVFPVIGAVFVVSIIGFLIFRQFRMKQKLSMLQNSVGVGGVSEARNKLNSEAGDIQMVEAGKMVISIEVMRNATDNFNEKNILGKGGFGTVYKGELHDGYCLDGNGKLLVYELMPQGTLSRHLFNWLEEGLEPLEWNTRLMIALDVARGKEKPLETNIAGTYGYLAPEYAVIGRVTTKVDVFSFGVILMELITGRKALDKTQSEDSMLLATWFCRMSINKDSFHKTIDSTIDLNEETLASIHTVAELAGHCCAREPDQRPDMGHIVNVLSSLVEFWKPSDQNSEDIYDIDHDMSLSQALKKWKAKGKSIMESSSSYSLLPSLDNTDT 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01148 427 Gene3D Transferase(Phosphotransferase) domain 1 199 250 - -
Vimu1g01148 427 Pfam Protein kinase domain 255 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01148 427 Gene3D Phosphorylase Kinase; domain 1 138 198 - -
Vimu1g01148 427 SUPERFAMILY Protein kinase-like (PK-like) 154 377 IPR011009 -
Vimu1g01148 427 Gene3D Transferase(Phosphotransferase) domain 1 251 394 - -
Vimu1g01148 427 PANTHER OSJNBA0070M12.3 PROTEIN 85 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01148 Vimu-Chr1 8791852 8793558 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01148 99 426 Receptor kinase-like Gene Family AT4G02010 28.401 3.42e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01148 Pkinase 4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01148 K00924 - gmx:100305404 458.373