Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01143 ATGAGGGCAATGGTTGCTGATTTTCGTCTATTGCATCTTGTTCCAGAAGGAAAAGTCTCTATAGAAAGAAGAATTGCAGGAACTTTTGGATATTTGGCACCAGAGTATGCAGTGACTGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGGGTGATATTGATGGAGCTGATAATAGGAAGAAAAGCACTTGATGAGACTCAACCCAAGGATAGCACACACCTTGTAACATGGTTCCGCATAATGTCCATAAATAAGGACTCATTTCGCAAGGCTATTGACTCAGCAATTGATCTCAACGAGGAAACTCTTGCTAGTATTCACACTCTTGTAGAGTTAGCTGGTCATTATTGTGTCAGGGAGTCATATCAAAGGCCTGACATGGGTCATATTGTTAACGTGTTTTCTTCTCTCGTTGAATTCTAG 429 0.4149 MRAMVADFRLLHLVPEGKVSIERRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELIIGRKALDETQPKDSTHLVTWFRIMSINKDSFRKAIDSAIDLNEETLASIHTLVELAGHYCVRESYQRPDMGHIVNVFSSLVEF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01143 142 Pfam Protein kinase domain 5 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01143 142 Gene3D Transferase(Phosphotransferase) domain 1 1 140 - -
Vimu1g01143 142 PANTHER OSJNBA0070M12.3 PROTEIN 1 141 - -
Vimu1g01143 142 SUPERFAMILY Protein kinase-like (PK-like) 2 136 IPR011009 -
Vimu1g01143 142 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01143 Vimu-Chr1 8730672 8731766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01143 2 134 Receptor kinase-like Gene Family AT4G02010 41.176 8.67e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01143 Pkinase 7.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01143 K00924 - gmx:100789646 238.81