Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01141 ATGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATAGCAATGAAAAGAATGGAGTGTGGGGCAATAAAAGGGAAGGGTGCAATAGAATTCAAGTCTGAAATTGTTGTTTTGACAAAAGTTCGCCACCGGAATCTTGTGGTTCTTATATGTTACTGCTTGGATGGGAATGAGAAGCTGCTTGTTTACGAGCTCATGCCTCAAGGAACATTGAGTAGACATCTTTTCAACTGGTCAGAAGAAGGATTGGAACCACTAGAGTGGAATAGAAGATTGACGATTGCCTTAGATATGGCAAGGGGTGTCGAGTACCTTCATGACTTGGCCCATCAAAGCTTCATACACAGGGACTTGAAATCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCTGATTTTGGTCTTGTGTGTTTTGCTCCGGAAGGAAAACCCTCTATAGAGACAAGAATTGCAAGAACTTTTGGATAA 477 0.4151 MVYRGELHDGTRIAMKRMECGAIKGKGAIEFKSEIVVLTKVRHRNLVVLICYCLDGNEKLLVYELMPQGTLSRHLFNWSEEGLEPLEWNRRLTIALDMARGVEYLHDLAHQSFIHRDLKSSNILLGDDMRAKVADFGLVCFAPEGKPSIETRIARTFG 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01141 158 Gene3D Transferase(Phosphotransferase) domain 1 67 158 - -
Vimu1g01141 158 SUPERFAMILY Protein kinase-like (PK-like) 2 148 IPR011009 -
Vimu1g01141 158 PANTHER OSJNBA0070M12.3 PROTEIN 1 158 - -
Vimu1g01141 158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Vimu1g01141 158 Gene3D Phosphorylase Kinase; domain 1 1 66 - -
Vimu1g01141 158 SMART serkin_6 2 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01141 158 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01141 158 Pfam Protein tyrosine and serine/threonine kinase 2 139 IPR001245 GO:0004672|GO:0006468
Vimu1g01141 158 FunFam Os07g0541700 protein 66 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01141 Vimu-Chr1 8727013 8727489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01141 2 158 Trihelix Transcription Factor Family AT1G70460 44.586 6.11e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01141 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01141 K00924 - gmx:100789646 280.411