Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01140 ATGGTGAGCAGAACCACCACCACCACTACCTACTTTCTAAATCCTTTACCCTTTTTCATTTTCTTAACCATCATGACCCTTTTCGCCAACTCCCAGGACGATGTTTCGGTAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGATGGACCGGCCCGGACCCATGCAAATGGGACCACGTCAGGTGCTCTGAGGATAAACGGGTCACCCGGATCCAAATCGGCCGCCTCAATCTCCAGGGTACTCTCCCTGCAACTCTTCAGAACTTGACCCAGTTGGAACAGTTGGAGCTCCAATACAACAACATCTCGGGTCCCATTCCCTCTCTTAACGGCTTGACCAACCTCCGTGTCTTCATTGCTAGCAACAACCGCTTCTCCGCCGTCCCCGCCGACTTCTTCGCCGGCATGTCGCAGCTCCAGGCGGTGGAGATCGACAACAACCCCTTTGAGCCCTGGGAGATCCCTCAGACTCTCCGAAACGCTTCTGTGCTTCAGAACTTCTCCGCCAACTCTGCCAATGTCAGAGGCACTTTGCCGGATTTCTTCAGCTCCGACGTGTTTCCTGGTTTGACGGTTTTGCACTTGGCCATCAATAACCTCGAGGGGACGTTGCCTTTGAGCTTTTCTGGCTCTCAGATTCAGTCTTTGTGGTTGAATGGGCAGAAGAGCGTTAACAGGCTCGGTGGCAGTGTTGCTGTTTTGCAGAACATGACTTTCTTGACGGAGGTTTGGTTGCACTCGAATGCTTTTACGGGTCCGTTGCCTGATTTGTCCGGGTTGAAGAGTTTGAAGGTTTTGAATTTGAGGGATAACAGGTTTACAGGTCCTGTTCCTCCTTCGTTGGTGGGTCTCAAGACACTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTCTGCCGGTGTTTGGCAATGGAGTTGAGGTGGATAACGATAAGGATTCCAACAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATTCTAGGGTGCAGGTTCTTCTTTCTATTGTTGGGCTTATGGGGTATCCTCAAAGGTTTGCCGAGGGTTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGAATTGCTTGTGGAGATGGGAATATAACTGTTGTTAATTTTCAGAAGATGCAACTTAGTGGTGAGATATCCCCAGACTTTTCAAAGATTAAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCAATTCCAGTAGAGCTTACTACTTTGCCTCGGCTTAGTCTATTGAATGTTGCGAACAATCAGCTTTATGGGAAGGTGCCGAGTTTTAGGAGTAATGTAGTTGTGAGTACTAATGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCAGGGTTCAGTGTCTCCAACGGCTCCCAATTCAAAGGGAGAAAACGGTGGGGGTTCTGGAAATGGTGGCAAAAAGTCTTCCCATGTCGGAATGATCGTGTTTTCAGTGATTGGGGCGGTTTTTGTGATTTCTATGATTGGTTTCCTAGTTTTCTGCCTGTTTAGGATGAAGCAAAATAAGTTGAGCAGGGTCCAGAGCCCAAATGCTCTAGTTATTCATCCTAGGCATTCTGGGTCTGATAATGAGAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCATACCTGGTAGTGAGACAGGAGATATCCAGATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTAAGGAATGTCACAGACAACTTCAGTGAGAAGAACATATTGGGACAAGGAGGTTTTGGAACGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATAGCAGTGAAAAGAATGGAGTGTGGAGCAATAACAGGGAAGGGTGCAGCAGAATTCAAGTCTGAAATAGCTGTTTTGACAAAAGTTCGTCATCGACATCTTGTAGCTCTTCTAGGTTATTGCTTGGACGGGAATGAGAAGCTGCTTGTGTACGAGTACATGCATCAAGGAACATTGAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGACTAGAACCACTGGAGTGGAATAGAAGATTGACGATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACAGGGACTTAAAACCTTCAAACATCCTCCTTGGAGATGATATGAGGGCAAAGGTTGCTGATTTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCGGAGTATGCAGTGACTGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTGATATTGATGGAGCTAATAACGGGAAGAAAAGCACTTGATGAGACTCAACCTGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGGATGTCCATAAATAAGGACTCATTCCGCAAGGCTATTGACTCCACAATTGATCTCAACGAGGAAACGCTTGCCAGTATTCACACTGTTGCAGAGTTAGCTGGCCACTGCTGTGCTAGGGAGCCATATCAAAGGCCTGACATGGGTCATACTGTTAACGTGCTTTCTTCTCTCGTTGAACTCTGGAAACCATCTGATCAGAATTCTGAAGATATATATGGCATTGACCTAGACATGTCCTTGCCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCGCTTCTACCAAGCTTGGATAACACACAGACAAGTATACCTACTCGCCCATATGGATTTGCGGATTCTTTCACATCAGCAGATGGTAGGTGA 2844 0.4662 MVSRTTTTTTYFLNPLPFFIFLTIMTLFANSQDDVSVMLALKNSLNPPGWTGPDPCKWDHVRCSEDKRVTRIQIGRLNLQGTLPATLQNLTQLEQLELQYNNISGPIPSLNGLTNLRVFIASNNRFSAVPADFFAGMSQLQAVEIDNNPFEPWEIPQTLRNASVLQNFSANSANVRGTLPDFFSSDVFPGLTVLHLAINNLEGTLPLSFSGSQIQSLWLNGQKSVNRLGGSVAVLQNMTFLTEVWLHSNAFTGPLPDLSGLKSLKVLNLRDNRFTGPVPPSLVGLKTLEVVNLTNNLFQGPLPVFGNGVEVDNDKDSNSFCLSGPGDCDSRVQVLLSIVGLMGYPQRFAEGWKGNDPCADWIGIACGDGNITVVNFQKMQLSGEISPDFSKIKSLQRIVLADNNLTGSIPVELTTLPRLSLLNVANNQLYGKVPSFRSNVVVSTNGNVDIGKDKSSQSPQGSVSPTAPNSKGENGGGSGNGGKKSSHVGMIVFSVIGAVFVISMIGFLVFCLFRMKQNKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTIPGSETGDIQMVEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYRGELHDGTRIAVKRMECGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMHQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDSTIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHTVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01140 947 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Vimu1g01140 947 ProSiteProfiles Protein kinase domain profile. 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01140 947 FunFam Receptor-like kinase TMK4 32 326 - -
Vimu1g01140 947 FunFam receptor protein kinase TMK1 671 888 - -
Vimu1g01140 947 SMART serkin_6 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01140 947 MobiDBLite consensus disorder prediction 911 936 - -
Vimu1g01140 947 FunFam Leucine-rich repeat receptor-like kinase 330 453 - -
Vimu1g01140 947 Gene3D Transferase(Phosphotransferase) domain 1 671 891 - -
Vimu1g01140 947 CDD STKc_IRAK 599 872 - -
Vimu1g01140 947 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Vimu1g01140 947 Pfam Protein kinase domain 594 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01140 947 Gene3D Ribonuclease Inhibitor 31 328 IPR032675 -
Vimu1g01140 947 FunFam receptor protein kinase TMK1 555 670 - -
Vimu1g01140 947 SMART LRR_typ_2 261 285 IPR003591 -
Vimu1g01140 947 SMART LRR_typ_2 113 136 IPR003591 -
Vimu1g01140 947 SMART LRR_typ_2 188 211 IPR003591 -
Vimu1g01140 947 PANTHER OSJNBA0070M12.3 PROTEIN 19 947 - -
Vimu1g01140 947 SUPERFAMILY Protein kinase-like (PK-like) 569 877 IPR011009 -
Vimu1g01140 947 MobiDBLite consensus disorder prediction 911 947 - -
Vimu1g01140 947 MobiDBLite consensus disorder prediction 447 481 - -
Vimu1g01140 947 ProSiteProfiles Leucine-rich repeat profile. 92 114 IPR001611 GO:0005515
Vimu1g01140 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Vimu1g01140 947 Pfam Leucine rich repeat N-terminal domain 331 366 IPR013210 -
Vimu1g01140 947 Pfam Leucine rich repeat N-terminal domain 32 64 IPR013210 -
Vimu1g01140 947 SUPERFAMILY L domain-like 63 437 - -
Vimu1g01140 947 MobiDBLite consensus disorder prediction 447 482 - -
Vimu1g01140 947 Gene3D Phosphorylase Kinase; domain 1 554 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01140 Vimu-Chr1 8716310 8719796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01140 79 875 Receptor kinase-like Gene Family AT5G07280 31.879 6.07e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01140 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01140 K00924 - gmx:100789646 1625.53