Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01138 ATGTCTTTCGCTCTCATCGAAGCTTGCAAGAAGCGAAAACGGTGGCCAAAATTTTTCAGGTTTCATTCATTCGGTGACCCTGGTATCCCAATTGTACCATTGGGTACTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCTGAAGATTATAGTGTCTCCGGGAATCCCCTATGGTGTACCCTTCTCATCCATGATAAGTCCAACGTAATGGCTCCTCTTTACACCGTCGAAGAGCACGTCTACCACTCTTCGCACCCCTTCTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGATTCTATAGATAGTCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGATATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATTATGGATCTATGGGATAGGGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGCTTCGTGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGCAGATGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACAGAACCAGACTACAATAATGCGATGACAACGCTTGGCTCCTTGGAGCTAGACATGATTGCAAAAGATTTGAGTAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACTGTAAAGTCTTCACGTGCTCCAGCCCCTAAGACAACAATCTCCTATTCTGCTTCCGCCGCAGCTGCTGATTCTACCTGTTCAGCATTAATGTCAAGAAATTCAACCAAACACACTCCTCCAACAAGATCAAATTCCATGAAGGAGAAATCTGTCAGGTATAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGTAGGTGGCCTACAAGGAGGCTAGAGTTTGCCGCTCAAGTGATTGTGGACGCACTGAAAGAAAACAAGGCTGTTAAACCAGGCACAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTACTTAAATCACTCAACAATGTCATTGTTGGAAACTATGTTGTTCGTCGGATGGTGAATCCATCAACTAGAATTCTAGAGTACACAATTCACGATCTTGGCAACGGGTACAAAGCCCCTGAACTGGAGACTGAGGGGATGGCTTATGTAGATCAACAAGTAGTAGAGTCATCTTGGGTGCCTGGTAACGATGTTTACTGCGACGTACTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCCGATTCAGAAATAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATACTTCGTAAAGGAGTGGGCAGAGAGGGATGAAATAGAGGAACAGTCATTGACATTCATTTGCCGACTGCAACCAAATTTTGTGGACAAAAAGTATGAGTTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCACTGCATGCAACGGTTGGAGACTTAAAGAGGGCTTCTGAGGCTGCTCTTAGGGACACGTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAACTTATGGGAGTGAGTGATGAGGAAGTGCTGTTTGGACTAATCCAGTCCGGTGTAGAACTTTGTGTGAGGGGAATTGCCATTGATTTGTGCACGAATTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGCGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGCATAGACGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTCGTACCCTCCAGGACCGAATCATCCTTTTGTTCAGATTCTCCTGATTCTTTTCTCATTCCAGCAGACCCTTCTCTTATGCTAGAATATCAGTATGCGTGA 2106 0.452 MSFALIEACKKRKRWPKFFRFHSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEDSIDSQRHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDASCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEPDYNNAMTTLGSLELDMIAKDLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAPKTTISYSASAAAADSTCSALMSRNSTKHTPPTRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGNGYKAPELETEGMAYVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYPDSEIVDLAIQTILDSRYFVKEWAERDEIEEQSLTFICRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRASEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFCSDSPDSFLIPADPSLMLEYQYA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01138 701 MobiDBLite consensus disorder prediction 313 332 - -
Vimu1g01138 701 MobiDBLite consensus disorder prediction 313 328 - -
Vimu1g01138 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Vimu1g01138 701 SUPERFAMILY FYVE/PHD zinc finger 610 671 IPR011011 -
Vimu1g01138 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 676 - -
Vimu1g01138 701 SMART PHD_3 620 666 IPR001965 -
Vimu1g01138 701 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Vimu1g01138 701 CDD PHD_MMD1_like 621 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01138 Vimu-Chr1 8694742 8697615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01138 10 671 PHD Transcription Factor Family AT5G22260 33.711 1.10e-119 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01138 K26271 - gmx:100797388 1228.77