Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01119 ATGGTTGAAGCCGGAAACATGGTCATTTCTGTACAAGTTCCGAGGAATGTCACAGACAACTTCAGTGAGAAGAACATATTGGGACAAGGAGATTTTGGAACGATTTATAGAGGTGAGCTCCATAATGGTACAAGAATAGCAGTGAAAAGAATGAAGTGTGGGGCAATAATAAAGAACGGTGCAGCAGAATTCAAGTATGAAATAGTTGTTTTGACAAAAGTTTGCCACCGACATCTTATGGCTCTTCTAGAGGAAGGACAGGAACCACTGGAGTGGAACAGAAGATTGACGATTGCCTTAGATGTGGCAAGGGGTGACGAGTACATGCGGGAAAATGTTGTTGATCTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCTATAGAGACAAGAAATGCTGGAACTTTTGGATACTTGGCACCTGAGTATACAGGAATCATATGTTTTGAACATGGTCAAAGCTCCACGAGGCTTGATACAAAAGCTGGAGCTTATCAGTTAAAACCACAAAGTGATAGTGTTGGTGGAGCTAGTGAAATGCGAACAATACCTAATAGTGAGGCAGGAGATATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAGGAATGTCATGGACAACTTCAGGAATCATGCATTAGAATTCAAGTTTGAAATTGTTGTTTTGACAAAAGTTTGCCACCGACATCTTGTGGCTCTTCTAGAGGAAGGACAGGAACCACTGGAGTGGAACAGAAGATTGACGATTGCCTTAGATATGGCAAGGAGTGTCGAGTACCTCCATGGCTTGACCCATCAAAGCTTCATACACAGGGACTTAAAATCTTCAATCATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCTGATCTTGGTCTTGTGTGTCTTGCTTCTAAAGGAAAAGCCTCTGTAGAGACAAAAATTGCAGGAACTTTTGGATACTTGGCACCCGAGTATGCAGGTATCACTTAG 990 0.4263 MVEAGNMVISVQVPRNVTDNFSEKNILGQGDFGTIYRGELHNGTRIAVKRMKCGAIIKNGAAEFKYEIVVLTKVCHRHLMALLEEGQEPLEWNRRLTIALDVARGDEYMRENVVDLGLVRLAPEGKASIETRNAGTFGYLAPEYTGIICFEHGQSSTRLDTKAGAYQLKPQSDSVGGASEMRTIPNSEAGDIQMVEAGNMVISIQVLRNVMDNFRNHALEFKFEIVVLTKVCHRHLVALLEEGQEPLEWNRRLTIALDMARSVEYLHGLTHQSFIHRDLKSSIILLGDDMRAKVADLGLVCLASKGKASVETKIAGTFGYLAPEYAGIT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01119 329 ProSiteProfiles Protein kinase domain profile. 21 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01119 329 Gene3D Transferase(Phosphotransferase) domain 1 81 166 - -
Vimu1g01119 329 Gene3D Transferase(Phosphotransferase) domain 1 233 327 - -
Vimu1g01119 329 Gene3D Transferase(Phosphotransferase) domain 1 8 80 - -
Vimu1g01119 329 PANTHER OSJNBA0070M12.3 PROTEIN 109 157 - -
Vimu1g01119 329 ProSitePatterns Protein kinases ATP-binding region signature. 27 58 IPR017441 GO:0005524
Vimu1g01119 329 SUPERFAMILY Protein kinase-like (PK-like) 7 145 IPR011009 -
Vimu1g01119 329 Pfam Protein kinase domain 222 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01119 329 SUPERFAMILY Protein kinase-like (PK-like) 198 326 IPR011009 -
Vimu1g01119 329 Pfam Protein tyrosine and serine/threonine kinase 24 83 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01119 Vimu-Chr1 8544309 8546092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01119 139 326 Trihelix Transcription Factor Family AT1G70460 29.572 1.66e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01119 Pkinase 1.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01119 K00924 - gmx:100305404 213.001