Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01117 ATGAAGTCTGCGCAGGTCAAAGAAGCGATTCTCTTTACTCTCCTAACGTGCGTCTTCGCCATTGCAGATTCCGATCTAGCTTCGGACAGAGCGGGGCTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACCCTGCTATGGAACACCACCCAAACAAACCCTTGCAGGTGGACCGGCGTCACCTGCACCGACGACAGAGTAACCATGCTGCGCCTCCCAGCGATGGGTCTCTCGGGTTCTCTCCCCTCCGGTTTGGGAAACCTCACCGAACTACAGACGCTCTCCCTCCGGTTCAACGCTCTAACCGGACCAATCCCCGCGGATTTTGTCAACCTCAAAGCGCTGCGGAACCTCTATCTCCAAGGAAACTTCTTCTCCGGAGAAATTCCCGATGCGGTGTTCGCGTTGCAGAACCTCGTCAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAGATTTCGCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTCTATCTCGAACGCAACAATTTTACTGGTTCAATCCCTGAACTCAGTGTTCCGCCTCTGGATCAGTTCAACGTCTCGTATAATTCCCTTACCGGTCCCATTCCGAACCGGTTTTCGAGTCTGGACCAAACTGCTTTTCTCGGGAACTCACTCTGCGGGAAGCCCTTGCAAAGCTGCCCCGGAACCGAGGAGGGAAAGAGTAAATTGTCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGTGGTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGGGAAAAACGATGAAAGTGTGTCAACGGGGAAGCGTGATGTGGGAGGTGAAGTGTCTCGTGAAAAGAGTGCTGAGAGTGGGAATTCTGGTTCGGCGGTGGCAGGTTCGGTGGAGAAGAGTGATGTTCAAAGCAGTGGCGGTGGAGATAAGAGTTTGGTGTTTTTTGGGAATGTGAATAGGGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTGTTGGGGAAAGGAACGTTTGGAACGACTTACAAGGCGACTTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTCACAGCCGCGGAGAGGGAATTCAGGGAGAAGATCGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTGCATGCAAATGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCTCTTGGTGCTGCTCGTGGGATTGCATACATTCATTCTCATGGCCCAACATTCTCTCATGGGAACATCAAGGCATCGAATATCCTTCTGACGAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTTCCAACCTCTACACCAAACCGTGTTTCTGGTTACAGAGCACCAGAGATCACTGATGCGCGAAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGCATCATGCTTCTGGAGCTGCTTACAGGGAAGGCTCCTGCTCATTCTTCACTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTGAAGGTGAGTGGAACACTGATGTATTTGACATGGAGCTTCTGAGGTACCAGAGTGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCACAATATCCTGATAAGAGACCTTCAATGGACGTGGTAGCAAGCAAGATTGAAGAAATTTGCCATTCTAGTTTAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATCCTGATAATGGATTTTCGCAACAATACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1920 0.4964 MKSAQVKEAILFTLLTCVFAIADSDLASDRAGLVSLRSALGGRTLLWNTTQTNPCRWTGVTCTDDRVTMLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGPIPADFVNLKALRNLYLQGNFFSGEIPDAVFALQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPELSVPPLDQFNVSYNSLTGPIPNRFSSLDQTAFLGNSLCGKPLQSCPGTEEGKSKLSGGAIAGIVIGSVVGLLLILLLLFFLCRKRSGKNDESVSTGKRDVGGEVSREKSAESGNSGSAVAGSVEKSDVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTAAEREFREKIEQVGKMVHHNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGPTFSHGNIKASNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVEGEWNTDVFDMELLRYQSVEEEMVKLLQLALECTAQYPDKRPSMDVVASKIEEICHSSLEKEEGKNHDFKDPDNGFSQQYYSVDSGVSQA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01117 639 MobiDBLite consensus disorder prediction 267 311 - -
Vimu1g01117 639 FunFam Probable inactive receptor kinase At1g48480 409 611 - -
Vimu1g01117 639 Pfam Protein kinase domain 337 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01117 639 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01117 639 CDD STKc_IRAK 340 603 - -
Vimu1g01117 639 SUPERFAMILY L domain-like 46 212 - -
Vimu1g01117 639 MobiDBLite consensus disorder prediction 267 285 - -
Vimu1g01117 639 PANTHER OS05G0588300 PROTEIN 11 607 - -
Vimu1g01117 639 Gene3D Transferase(Phosphotransferase) domain 1 409 626 - -
Vimu1g01117 639 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Vimu1g01117 639 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Vimu1g01117 639 MobiDBLite consensus disorder prediction 287 311 - -
Vimu1g01117 639 SUPERFAMILY Protein kinase-like (PK-like) 338 598 IPR011009 -
Vimu1g01117 639 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Vimu1g01117 639 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Vimu1g01117 639 FunFam pollen receptor-like kinase 1 303 408 - -
Vimu1g01117 639 Gene3D Phosphorylase Kinase; domain 1 305 408 - -
Vimu1g01117 639 MobiDBLite consensus disorder prediction 610 639 - -
Vimu1g01117 639 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vimu1g01117 639 MobiDBLite consensus disorder prediction 622 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01117 Vimu-Chr1 8531147 8533793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01117 25 603 Receptor kinase-like Gene Family AT1G48480 57.329 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g01117 Pkinase 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01117 - - gmx:100801103 1025.77