Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01098 ATGAACACTGTTATCTGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTTTCTATTCTTTCCCCAAACCCTCTTTCTTGTTCTCAACAACCACTTCAGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACCAGAGGCTGCACTGAAACTATCCAAACGACTTCGTTTTAGCACCGCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCGCCCCCCAGATCCACCGCATCCTCAGCAACTATCCCCGACTCATGCTATGCAACCCCACCCGAACGCTTCTCCCAAAATTCCACTTCTTGACCTCTAAAGGTGTTTCTGCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCGTTTCCTCTGTAGCAGCCTCGAAAACTGCATCTTCCTCACCTTCCAACTCTTCCGAAGGTTCTTTCCCTCCGACCTCAAAGCCCTCACTGTTTTCCTCGCCCGTTCCTATGTCATCGGCAACACTCACTTGTTGGCATCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCGCGCACATTGGCATTCGGTACTTGCTCTCTTCTCGGTCTTTCGTTCTCTACTCGAACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTAACCTTCGCTGTGGCCCTTGAGGCCAAAAGTACTGTTTCCAAACCCCGTTGGGATACCAAAGTCGACGTCTTGAAGAAATGGGGTTGGTCTGAAGATGAGATTTTGGTTGCGTTTAGGAAACAGCCTAAACTGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACAGGGTTTTGGGTGGATCGGCTTGGATGGGATCGTTCTACGCTTATTGCGTACCCTTCGTTGTTTCAGTTCAGTTTGGAGAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGGAGGCTAGCTTCGTCACACCGTTTCTAAAGTCTGATGAGGGGTTTCTGAAAAGGTATGTGAGATATTTCACGGAGGAAACACCCTGGTTACTAGAGCTATATCAGAAGGGACAGGGAGCATCTTAG 1104 0.4946 MNTVICHRLRLSPKLLFYSFPKPSFLFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKRLRFSTAQKPDSVISFFQTHGFSAPQIHRILSNYPRLMLCNPTRTLLPKFHFLTSKGVSASDVVSIVTRNPRFLCSSLENCIFLTFQLFRRFFPSDLKALTVFLARSYVIGNTHLLASNVERLLDAGVAHIGIRYLLSSRSFVLYSNLRTLLEEVKLLGFDPLKVTFAVALEAKSTVSKPRWDTKVDVLKKWGWSEDEILVAFRKQPKLMLCSMEKLDAVTGFWVDRLGWDRSTLIAYPSLFQFSLEKRLVPRALVLQHLLSRGLVKKEASFVTPFLKSDEGFLKRYVRYFTEETPWLLELYQKGQGAS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01098 367 PANTHER CGI-12 PROTEIN-RELATED 34 347 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 SMART mt_12 191 219 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 SMART mt_12 290 324 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 FunFam Mitochondrial transcription termination factor-like 136 353 - -
Vimu1g01098 367 Pfam mTERF 240 341 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 Pfam mTERF 72 209 IPR003690 GO:0003690|GO:0006355
Vimu1g01098 367 Gene3D Transcription termination factor 3, mitochondrial 145 353 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01098 Vimu-Chr1 8234529 8235632 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g01098 mTERF 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01098 K15031 - var:108336607 346.665