Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01088 ATGAACACTATCCTCCGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTTTCTATTCTTTCCCCAAACCCTCCTTCTCGTTCTCAACAACCACTTCCGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACCAGAGGCTGCACTGAAACTATCCAAACGACTTCGTTTCAATACCGCCCAAAAACCCGATTCCGTCATCTTCTTCTTCCAAACCCACGGTTTCTCCGCCCCCCAGATCCACCGCATCCTCAGCAAGTGCCCCGAACTCATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCCACTTCTTGACCTCCAAAGGTGTTTCTCCATCCGACGTCGTTTCCATTGTCACTAAGAACCCCCGTTTCCTCTGTCGCAGCCTCGAAAACTGCATCTTCCCCACCTTCCAACTCCTCCGAAGGTTCTTTCCCTCCGACCTCAGGGCCCTCACTGTTTTCGTCGCCTTTCCCTCTGCCACCGGCCACTGTCGCATGGCATCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCGCGCACGTCGGCATTCGGCACTTGCTATCGACTCGGTCTTTTGTTCTCTGCTCCAACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTGACCTTCGCTGTTGCCCTTCAGGTCAAAAGTACTGTTCCGAAACCCCTTTGGGTTGCCAAAGTCGACTTGTTAAAGAAATGGGGTTGGTCTGAGGATGAGGTTTTGGTTGCGTTTAGGAAACATCCTGCAATGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGAGCTTATTACGTACCCTTGGTTGTTTAGGTACAGTTTGGAGAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGCTTGCATCTCCACACTATTTTGTAAGTCTGATGAGGAGTTTCTGAAAAAGTATGTGAGATCTTTCAAGGAGGAAACACCCTGGTTACTAGAGCTATATCAGAAGGGACAGGGAGCATCCTAG 1101 0.5086 MNTILRHRLRLSPKLLFYSFPKPSFSFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKRLRFNTAQKPDSVIFFFQTHGFSAPQIHRILSKCPELMVCDPTRRLLPKFHFLTSKGVSPSDVVSIVTKNPRFLCRSLENCIFPTFQLLRRFFPSDLRALTVFVAFPSATGHCRMASNVERLLDAGVAHVGIRHLLSTRSFVLCSNLRTLLEEVKLLGFDPLKVTFAVALQVKSTVPKPLWVAKVDLLKKWGWSEDEVLVAFRKHPAMMLCSMEKLDAVTGFWVGRLGWDRSELITYPWLFRYSLEKRLVPRALVLQHLLSRGLVKKDACISTLFCKSDEEFLKKYVRSFKEETPWLLELYQKGQGAS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01088 366 PANTHER CGI-12 PROTEIN-RELATED 34 349 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 Pfam mTERF 74 209 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 Pfam mTERF 241 341 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 Gene3D Transcription termination factor 3, mitochondrial 166 352 IPR038538 -
Vimu1g01088 366 FunFam Mitochondrial transcription termination factor-like 136 352 - -
Vimu1g01088 366 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vimu1g01088 366 SMART mt_12 191 218 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01088 Vimu-Chr1 8105673 8106773 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g01088 mTERF 7.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01088 K15031 - var:108336607 326.635