Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01085 ATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCCATTTCTTGACCTCCAAAGGTGTTTCTTCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCGTTTCCTCCGTAGCAGCCTCGAAAACTGCATCTTTCCCACCTTCCAACTCCTCCGAAGGTTCTTTCCCTCCGACCTCAGAGCCCTCGCTGTTTTCGTCGACTGGCCCTATGTCATCGGGCACTGTAGCTTGGCATCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCGCGCACGTCGGCATTCGGTACTTGCTAAACACTCGGTCTTTTGTTCTCTGCTCCAACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTGACCTTCGCTGTTGCCCTTCAGGCCAAAACTTTTTCGAAAGCCCTTTGGCATGCCAAAGTCGACGTGTTGAAGAAATGGGGTTGGTCTGAGGATGAGGTTTTGGTTGCGTTTAGGAAACAACCTGCAATGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGAGCTTATTGCGTACCCTTGGTTGTTTAGGTACAGTTTGGAGAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCATCATCTTCTCTCCAGAGGATTGGTGAAGAAGGAGGCTAGCATCTTCACACCATTTTGTTACTCTGAAGAGGAGTTTCTGAAAAAGTATGTGAGATCTTTCACGGAGGAAACACCCCGGTTACTAGAGCTATATGAGAAGGGACAGGGAGCATCCTAG 813 0.5043 MVCDPTRRLLPKFHFLTSKGVSSSDVVSIVTRNPRFLRSSLENCIFPTFQLLRRFFPSDLRALAVFVDWPYVIGHCSLASNVERLLDAGVAHVGIRYLLNTRSFVLCSNLRTLLEEVKLLGFDPLKVTFAVALQAKTFSKALWHAKVDVLKKWGWSEDEVLVAFRKQPAMMLCSMEKLDAVTGFWVGRLGWDRSELIAYPWLFRYSLEKRLVPRALVLHHLLSRGLVKKEASIFTPFCYSEEEFLKKYVRSFTEETPRLLELYEKGQGAS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01085 270 PANTHER CGI-12 PROTEIN-RELATED 2 251 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 SMART mt_12 193 227 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 Gene3D Transcription termination factor 3, mitochondrial 1 258 IPR038538 -
Vimu1g01085 270 Pfam mTERF 2 114 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 Pfam mTERF 141 245 IPR003690 GO:0003690|GO:0006355
Vimu1g01085 270 FunFam Mitochondrial transcription termination factor-like 41 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01085 Vimu-Chr1 8088125 8088937 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g01085 mTERF 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01085 K15031 - var:108336607 318.546