Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01083 ATGAACACTGTTATCTGCCACCGACTAAAACTAAGTCCAAAACTTTTTCTCTATTCTTTCCCCAAACCCTCCTTCTCGTTCTCAACAACCACTTCCGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACCAGAGGCTGCACTGAAACTATCCAAACAACATCGTTTCAAAACCGCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCGCCCCTCAGATCCACCGCATCCTCAGCAGGTGCCCCCAACTCATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCCACTTCTTGACCTCCAAAGGTGTTTCTGCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCGTTTCCTCCATCGCAGCCTGGAAAACTGCATCTTACCCACCTTCCAACTCTTCCGAAGGTTCTTTCCCTCCGACCTCAGAGCCCTCACTGGTTTCGTCGCCTGTCCCTATGTCATCGACAACACTCACTTGGCTTCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCGCGCACGTTGGCATTCGGCACTTGCTCTCCTCTCGGTCTTTTGTTCTCTGCTTCAACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTGACGTTTGCTGTTGCCCTTGAGGCCAAAAGTACTGTTTCGAAACCCCTTTGGAATGCCAAAGTCGACGTGTTGAAGAAATGGGGTTGGTCTGAGGATGAGGTTTTGGTTGCGTTTAGGAAAGATCCTGAAATGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGCGCTTATTGCGTACCCTTCGTTGTTTAAGTACAGTTTCGAGAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGAATGCTAGCATCTCCACACTATTTTGTCAGTCTGGTGAGGAGTTTCTGAAAAAGTATGTGAGATCTTTCAAGGAGGAAACACCCCGTTTACTAGAGCTATATCAGAAGGGACAGGGAGCATCCTAG 1101 0.4986 MNTVICHRLKLSPKLFLYSFPKPSFSFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKQHRFKTAQKPDSVISFFQTHGFSAPQIHRILSRCPQLMVCDPTRRLLPKFHFLTSKGVSASDVVSIVTRNPRFLHRSLENCILPTFQLFRRFFPSDLRALTGFVACPYVIDNTHLASNVERLLDAGVAHVGIRHLLSSRSFVLCFNLRTLLEEVKLLGFDPLKVTFAVALEAKSTVSKPLWNAKVDVLKKWGWSEDEVLVAFRKDPEMMLCSMEKLDAVTGFWVGRLGWDRSALIAYPSLFKYSFEKRLVPRALVLQHLLSRGLVKKNASISTLFCQSGEEFLKKYVRSFKEETPRLLELYQKGQGAS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01083 366 Pfam mTERF 240 341 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 Pfam mTERF 72 210 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 PANTHER CGI-12 PROTEIN-RELATED 34 349 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 Gene3D Transcription termination factor 3, mitochondrial 162 355 IPR038538 -
Vimu1g01083 366 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 SMART mt_12 191 218 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Vimu1g01083 366 FunFam Mitochondrial transcription termination factor-like 136 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01083 Vimu-Chr1 8059575 8060675 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g01083 mTERF 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01083 K15031 - var:108336607 329.331