Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01078 ATGACTTTCTGTTCTGATCACACCAAGGGTGTTTCCAATGAACATGTTTCCTCTTCAGTTGGAAACGACTCTTCTGAGAACAAAAGGCTCAAATTCATGGCCTTTTTGAGAAAAACCATGTGGAACTTTGCTTTGGCGTGTGTTGGTGTTGCTCCTTGTGGTGGCAGCAACGATCATAACGGTCAAAGGAAGACAGCTTCGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGGCTACTGCTGACCCTCAATCGGTTCACTCATCTTTCAGGTTCAGCTTCTGCTCTCAGGTTGAGGTTGAGTCCTTCAACATGAGCTCTTCTGCTTCTGCGGCTGCCGCTGCAACCTTTTTGATGGTAAATTTGGAATGTGAATCTCAAGTTAAGGAGATGAAATGGAGAATACATTCGCTGGAGAAAAGCATGTCTCCAGTCTTCAACCCTTTGATCAGGTTCAGCTATGATGAAATTCTATCAGCCACTCACAATTTCTCCAAAGGGAGAGTGTTGGGAAGAGGTGCCTTGAGCTGTGTTTATAGAGGAAGATTTGGGTTTTGGAGAACTGCTGTTGCTATTAAAAGGTTGGACAAGGAAGACAAGGAGTGTGCTAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAATGTTGTTCCTCTTGTGGGGTTTTGTATTGACTCAGAAGAGGGTTTGTTTTTGGTATACAAGTATGTGTCTGGGGGAAGCTTAGAGCATCACTTGCATGGTAGGAAGAAGAAAAGTGTGAAGGGTAGTTCTCCACTTCCATGGTCTGTGAGATATCAAGTTGCAATTGGGATTGCAGAAGCCGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTGCTCTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTACATGGACTTCTGCCCCGTCAGTTCCCTTTCTTTGCAAAACAGTGAAAGGAACATTTGGTTATTTGGCACCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTGGGAGTTGTTTTATTGGAACTCTTAACTGGCCGCAAGCCAATTGAAGCAAAAAGACCCCCTGGAGAGGAAAACTTGGTGATATGGGCTAAACCTTTGCTCAGGAAAGGGAAAGGAGCGATTCAAGAGTTGCTTGATCCTCAAGTCAAGTACAATTCGAGTTACACAGATCAAATGGCTCGGATGGTGGATGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTAGGAGGCCAAGCATAGGTGAGATTGTTGCAATACTGAAAGGTGAAGTTGAACCTGTGCTCTCTAGAAGAAGGAAGTCTGGTTATCTTGGTAATGGATTTTTGATTGATTATTACCCTCAGTTACAACAAACAAACAATGAGATGAAAAGTCACCTGGCCTTGGCAATGCTAGGAGTTCCTGAGTGTGAGGATGATGATTTTCTCTACGATCGTTGA 1527 0.4322 MTFCSDHTKGVSNEHVSSSVGNDSSENKRLKFMAFLRKTMWNFALACVGVAPCGGSNDHNGQRKTASEHNKAWLLAESGAELATADPQSVHSSFRFSFCSQVEVESFNMSSSASAAAAATFLMVNLECESQVKEMKWRIHSLEKSMSPVFNPLIRFSYDEILSATHNFSKGRVLGRGALSCVYRGRFGFWRTAVAIKRLDKEDKECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGRKKKSVKGSSPLPWSVRYQVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELLTGRKPIEAKRPPGEENLVIWAKPLLRKGKGAIQELLDPQVKYNSSYTDQMARMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVLSRRRKSGYLGNGFLIDYYPQLQQTNNEMKSHLALAMLGVPECEDDDFLYDR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01078 508 FunFam probable serine/threonine-protein kinase PBL7 130 245 - -
Vimu1g01078 508 FunFam Putative receptor-like serine/threonine-protein kinase 246 464 - -
Vimu1g01078 508 ProSiteProfiles Protein kinase domain profile. 168 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01078 508 SMART serkin_6 168 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01078 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vimu1g01078 508 PANTHER OS01G0750732 PROTEIN 42 454 - -
Vimu1g01078 508 Gene3D Transferase(Phosphotransferase) domain 1 246 460 - -
Vimu1g01078 508 MobiDBLite consensus disorder prediction 1 24 - -
Vimu1g01078 508 SUPERFAMILY Protein kinase-like (PK-like) 147 450 IPR011009 -
Vimu1g01078 508 Pfam Protein kinase domain 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01078 508 Gene3D Phosphorylase Kinase; domain 1 153 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01078 Vimu-Chr1 8017195 8019379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01078 156 452 Trihelix Transcription Factor Family AT1G70460 42.140 2.21e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu1g01078 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01078 - - gmx:100802176 877.47