Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01075 ATGGCACTCTCTTTGACATCTCATGAGGTCAGTGAGTACCAAAAATGTGGGGTTGAAGAGGAAGATGGTTCACAAAGTACTAATGGCTTCAGCAATGATTCAGTTTCAGCCATAACTCAATCTCTGATTAACTTCAAAGCCGACGAGTTCAGCAGCCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGCTGGATGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGCAACCAATGGAACCATGTTAGTCCCAAAAACAGCACTACAGACATGCGCCTAGTCCAAAATTTCAGCTGCTCTGAAACTGCTACTTGCTATAGCTCCATATTCAATGGTGCAAAAGATAAGATTAAACAATGTGAAAGTTCATCTTCTGGGTGGCTATACTCAGAACCAAATGTCCATAGTTCTAGCCTGAATGAGTCAGCAGCAGCACAAGAATCGGTCTTGAGAAAGCGATCTTTTATGGGAGAGACCATGCAAGCTGCCAATAATGCCAAGAAGCCTTGCACAACTGCAAGTAAAGCAACAAAACCAAAGTCAAGCCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCCAACGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGATATTTCTCAAGTAAGACAAGCCATTGATTCCATTCTTTCATCTCAAAGATGA 822 0.4234 MALSLTSHEVSEYQKCGVEEEDGSQSTNGFSNDSVSAITQSLINFKADEFSSLMQGSESFLSFQQSWMFSKESNLHEGCNQWNHVSPKNSTTDMRLVQNFSCSETATCYSSIFNGAKDKIKQCESSSSGWLYSEPNVHSSSLNESAAAQESVLRKRSFMGETMQAANNAKKPCTTASKATKPKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDSILSSQR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01075 273 MobiDBLite consensus disorder prediction 165 198 - -
Vimu1g01075 273 MobiDBLite consensus disorder prediction 165 192 - -
Vimu1g01075 273 Gene3D - 181 243 IPR036638 GO:0046983
Vimu1g01075 273 FunFam Transcription factor bHLH83 184 243 - -
Vimu1g01075 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 245 IPR036638 GO:0046983
Vimu1g01075 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 243 IPR045843 GO:0003700|GO:0006355
Vimu1g01075 273 CDD bHLH_AtIND_like 187 249 - -
Vimu1g01075 273 Pfam Helix-loop-helix DNA-binding domain 196 236 IPR011598 GO:0046983
Vimu1g01075 273 SMART finulus 192 241 IPR011598 GO:0046983
Vimu1g01075 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01075 Vimu-Chr1 7980510 7981758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01075 130 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 66.434 4.96e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g01075 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01075 - - vra:106764568 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01075 1 7980510 7981758 Vimu1g01075 1 7980510 7981758 ECH
Vimu6g01848 6 16698860 16700433 Vimu1g01075 1 7980510 7981758 PCT