Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01071 ATGTGTATTGTCGGGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCGATAATCAGTTTCCTCAAGTCAGAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACCAACAAACCAATCATCAGTTCTTGTGGCGCCATTCCTCTGCTTGTAAATACTCTTAAAGATGGAAGCCCTCAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAATTTATCAACACACCCTGAAAACCTGAGCATCATTCTCGAAACAAATGCAATGCCTTTTATAGTTAATCTTCTCAATACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTGTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGTAGAACTGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTCGTGGAAGTTCTTGAAAATGGAACGCCCCAGAGTAGGGAACATGCAGTTGGAGCACTACTGAGAATGTGTGAAAGTGATAGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTGACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTGAGAGAGTCTCCATATTCAAGACCTGAAGTGGAACCGGACACTCTTCAGAACATAGTTTGTGACATCATATCACAGATTGATGGAGATGATCAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTAAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACTCCTTCTGATATGCCTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 867 0.4268 MCIVGNKISIVEAGALEPIISFLKSENPNLREYATASLLTLSVSPTNKPIISSCGAIPLLVNTLKDGSPQAKVDAVTALSNLSTHPENLSIILETNAMPFIVNLLNTCRKSSKIAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01071 288 PANTHER U BOX DOMAIN-CONTAINING 6 214 - -
Vimu1g01071 288 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 55 97 IPR000225 GO:0005515
Vimu1g01071 288 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 140 IPR000225 GO:0005515
Vimu1g01071 288 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 14 56 IPR000225 GO:0005515
Vimu1g01071 288 Pfam Armadillo/beta-catenin-like repeat 5 39 IPR000225 GO:0005515
Vimu1g01071 288 Pfam Armadillo/beta-catenin-like repeat 47 83 IPR000225 GO:0005515
Vimu1g01071 288 SMART arm_5 128 169 IPR000225 GO:0005515
Vimu1g01071 288 SMART arm_5 44 84 IPR000225 GO:0005515
Vimu1g01071 288 SMART arm_5 85 127 IPR000225 GO:0005515
Vimu1g01071 288 SMART arm_5 3 43 IPR000225 GO:0005515
Vimu1g01071 288 SUPERFAMILY ARM repeat 6 197 IPR016024 -
Vimu1g01071 288 Gene3D - 5 266 IPR011989 -
Vimu1g01071 288 FunFam U-box domain-containing protein 4 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01071 Vimu-Chr1 7955431 7957890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01071 6 211 U-box Gene Family AT2G23140 36.893 9.75e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01071 - - gmx:100793971 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01071 1 7955431 7957890 Vimu1g01071 1 7955431 7957890 ECH
Vimu6g01847 6 16682862 16683218 Vimu1g01071 1 7955431 7957890 PCT