Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01070 ATGACCACCAAAGCTGAAGGCACTCCAGAAGAAGATACAATGTCAAGTATGGAAGAGGGTTTTTCCCCTAGCCCTTCCACAACCTTTGGATTGCATCACTGTTGTTCAAACCGTGTTGCAACCCTGGCCCAGAAGGTCGTGAATAAGATCTATGGCTCAGTCACATTTCCAGGCATTTGTGTGACATGGGGACTCATCGTAATGGTCATGATTTACACTGTTGGTCATATCTCTGGAGCACACTTCAACCCTGCAGTCACCATCACTTTAGCCATTTTTCGCCGCTTCTCATATAAACAGGTGCCACTGTACATTTTTGCTCAGTTACTGGGGTCTATACTTGCAAGTGGCACTCTAGCCCTAATGTTGGATGTAACACCTAAATCTTTCTTTGGAACCATACCAGTTGGATCCAATGTCCAATCTTTAGCTGCTGAAACCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCTGTTACTACAGACGACAGAGCGGTGGGTGATTTTGCAGGAGTTGTAGTTGGGATGACTATAATGTTGAATGTCTTCGTTGCCGGGCCTGTATCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGTCCTTCGCTTATGATACATGTTTACAAAGGGTTGTGGATATATATCGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCCACCACACACAATTCACCTTCAGAAGAAATCACAGGGCCTTCTTCAGGTTTTGAATTTATTTCTCATTTATGA 777 0.4337 MTTKAEGTPEEDTMSSMEEGFSPSPSTTFGLHHCCSNRVATLAQKVVNKIYGSVTFPGICVTWGLIVMVMIYTVGHISGAHFNPAVTITLAIFRRFSYKQVPLYIFAQLLGSILASGTLALMLDVTPKSFFGTIPVGSNVQSLAAETIITFLLMFVISAVTTDDRAVGDFAGVVVGMTIMLNVFVAGPVSGASMNPARSIGPSLMIHVYKGLWIYIVGPIIGAIAGALAYNFLRSTTHNSPSEEITGPSSGFEFISHL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01070 258 Gene3D Glycerol uptake facilitator protein. 26 245 IPR023271 -
Vimu1g01070 258 NCBIfam MIP family channel protein 33 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 SUPERFAMILY Aquaporin-like 34 242 IPR023271 -
Vimu1g01070 258 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vimu1g01070 258 Pfam Major intrinsic protein 42 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu1g01070 258 MobiDBLite consensus disorder prediction 1 25 - -
Vimu1g01070 258 MobiDBLite consensus disorder prediction 239 258 - -
Vimu1g01070 258 PANTHER AQUAPORIN NIP2-1 40 238 IPR034294 -
Vimu1g01070 258 CDD MIP 53 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01070 Vimu-Chr1 7949679 7951296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01070 1 250 Major Intrinsic Protein MIP AT5G37820 55.556 3.31e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01070 K09874 - gmx:100791338 360.533