Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01066 AGCTTCCATCCCTTCTTTTACTCTCTCTCTCTCTCATCACAACCTCAACCTCCTACAAAGGTGGACTTCACAAAGAAACAAACTATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGTGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCATGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCCGGAAGAACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAGTCCATGAATAATAAAGTTTCTATCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCAGGAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTATGATTGGTGCTTTGGAACACAAGCCAGTACAAAATTCCGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG 687 0.4163 SFHPFFYSLSLSSQPQPPTKVDFTKKQTMRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAADIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEAASTSESMNNKVSIFKSPLAATHHRISFTEQESGIISSPSLNLDLTIALPSSMIGALEHKPVQNSESTKTLDMEIDLNC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01066 228 CDD SANT 80 120 IPR001005 -
Vimu1g01066 228 Gene3D - 78 155 - -
Vimu1g01066 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vimu1g01066 228 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g01066 228 Gene3D - 38 72 - -
Vimu1g01066 228 SUPERFAMILY Homeodomain-like 38 116 IPR009057 -
Vimu1g01066 228 ProSiteProfiles Myb-like domain profile. 36 120 IPR001005 -
Vimu1g01066 228 SMART sant 40 72 IPR001005 -
Vimu1g01066 228 SMART sant 74 122 IPR001005 -
Vimu1g01066 228 MobiDBLite consensus disorder prediction 130 154 - -
Vimu1g01066 228 Pfam Myb-like DNA-binding domain 77 119 IPR001005 -
Vimu1g01066 228 Pfam Myb-like DNA-binding domain 41 69 IPR001005 -
Vimu1g01066 228 MobiDBLite consensus disorder prediction 134 154 - -
Vimu1g01066 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 29 165 - -
Vimu1g01066 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 69 IPR017930 -
Vimu1g01066 228 FunFam Transcription repressor MYB4 77 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01066 Vimu-Chr1 7915081 7916192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01066 30 202 MYB Transcription Factor Family AT4G38620 47.115 5.47e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g01066 Myb_DNA-binding 3.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01066 K09422 - gmx:100793444 301.982