Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01061 ATGAACCCTGTTTTTCTTTTGAAATGGGCAGGTTTGAGCTCAAAGGATGGTAACACAGAAGAGGATGGCTTAAGCAGCAAGATCTCCAATCCCTCCGTGCCTCCAACACCAAGGACAGAGGGTGAGATCTTGAAGTCCTCAAATATGAAAAGCTTCACCTTTGTTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGTTTTGGTCGTGTTTTTAAGGGGTGGATTGATGAGCAATCACTTGCACCAGTTAGACCAGGGACTGGATTGGTCATTGCTGTGAAGATGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAGACTGATTGGTTACTGCTTAGAGGATCACCAAAGGCTTTTGGTGTATGAGTTTTTGACAAAGGGAAGTTTGGATAATCATTTATTTAGGAGAGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCTAACTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCTACAAGGGTAATGGGCACTTATGGCTATGCTGCTCCTGAATATATTGCCACAGTATCAAAGTTGAATCCCGTTACTATTATTATTTTGAAGTCTCAATGCTATGTCTGGAGTTCAAGTAACGCCATGCATGATGAAACACTACATTTGAAGTGTTTGAATAGAATGAAAGTTGAGTCCTTGCTCTTGTGTTTTTGTGAAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATCATGTCTGGCAAACGTGCCCTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATTGAATGGGCCAAACCATACCTTAGCAACAAACGCAGGATCTTCCAAGTCATGGATGCTCGCATAGAAGGCCAATACTCGACGCGCGAAGCCATGAAAGTAGCCAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTAGTGAGAGCATTGGAAGAACTTCAGGATTCTGGTGAGAAAACTGTTGCAGGGGTGGGAAGCCATCGTCATCATCAAACTGGGAGTGGCTACAGACAACATAGAGGAAAACAACACGAAACAACAAAGAAGTGA 1305 0.4307 MNPVFLLKWAGLSSKDGNTEEDGLSSKISNPSVPPTPRTEGEILKSSNMKSFTFVELKTATRNFRPDSVVGEGGFGRVFKGWIDEQSLAPVRPGTGLVIAVKMLNQEGLQGHSEWLTEINYLGQLHHPNLVRLIGYCLEDHQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYIATVSKLNPVTIIILKSQCYVWSSSNAMHDETLHLKCLNRMKVESLLLCFCEGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSTREAMKVANLAIQCLSVEPRFRPKMDEVVRALEELQDSGEKTVAGVGSHRHHQTGSGYRQHRGKQHETTKK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01061 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vimu1g01061 434 MobiDBLite consensus disorder prediction 16 41 - -
Vimu1g01061 434 SUPERFAMILY Protein kinase-like (PK-like) 48 396 IPR011009 -
Vimu1g01061 434 Gene3D Phosphorylase Kinase; domain 1 39 149 - -
Vimu1g01061 434 MobiDBLite consensus disorder prediction 402 434 - -
Vimu1g01061 434 FunFam Serine/threonine-protein kinase BIK1 31 149 - -
Vimu1g01061 434 MobiDBLite consensus disorder prediction 23 41 - -
Vimu1g01061 434 Pfam Protein tyrosine and serine/threonine kinase 68 252 IPR001245 GO:0004672|GO:0006468
Vimu1g01061 434 Pfam Protein tyrosine and serine/threonine kinase 297 395 IPR001245 GO:0004672|GO:0006468
Vimu1g01061 434 PANTHER OS01G0588500 PROTEIN-RELATED 34 399 - -
Vimu1g01061 434 ProSiteProfiles Protein kinase domain profile. 64 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01061 434 Gene3D Transferase(Phosphotransferase) domain 1 150 416 - -
Vimu1g01061 434 FunFam Os07g0541700 protein 150 239 - -
Vimu1g01061 434 ProSitePatterns Protein kinases ATP-binding region signature. 70 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01061 Vimu-Chr1 7878451 7880641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01061 24 395 Glycoside Hydrolase AT3G07070 41.927 4.54e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu1g01061 PK_Tyr_Ser-Thr 9.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01061 - - gmx:100775335 657.907