Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g01054 | ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGTGGAGGAGGGTCCAATAGAAGGGGATTCGGTGGAGGCAGGCGCAGGGACAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTTCGTGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAAGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGACGCCTCAGAGGCACAGTACCATATGAACAGACAGATCTTTGCTGGAAGGGAAATATCTGTGGTTGTTGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGGACTAGAGCCAGAGGACCGGCAGGCTATGGAGGCCGAAGGTCTTCTCATTATGGGCGTTCTCGATCTCGCTCTGTTACTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCGTAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGAACTAAAGCGTAGATCTTATTCTCCTGCATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCCTTGGGTCTAGATCAAGATCTGCTGACCTGTCACCAAGGCGTGGAAGATGA | 792 | 0.5038 | MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRARGPAGYGGRRSSHYGRSRSRSVTRSRSPPYHSGSRSRSYSPAPRRQSDYSVSPRRQAEHRRSPRGPPRERDGELKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPLGSRSRSADLSPRRGR | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g01054 | 263 | MobiDBLite | consensus disorder prediction | 214 | 229 | - | - | |
Vimu1g01054 | 263 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 39 | 117 | IPR000504 | GO:0003723 | |
Vimu1g01054 | 263 | SMART | rrm1_1 | 40 | 113 | IPR000504 | GO:0003723 | |
Vimu1g01054 | 263 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 110 | IPR000504 | GO:0003723 | |
Vimu1g01054 | 263 | MobiDBLite | consensus disorder prediction | 182 | 208 | - | - | |
Vimu1g01054 | 263 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 39 | 216 | - | - | |
Vimu1g01054 | 263 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 146 | IPR035979 | GO:0003676 | |
Vimu1g01054 | 263 | MobiDBLite | consensus disorder prediction | 118 | 263 | - | - | |
Vimu1g01054 | 263 | Gene3D | - | 31 | 154 | IPR012677 | - | |
Vimu1g01054 | 263 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Vimu1g01054 | 263 | MobiDBLite | consensus disorder prediction | 152 | 181 | - | - | |
Vimu1g01054 | 263 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL30 isoform A | 32 | 173 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g01054 | Vimu-Chr1 | 7827308 | 7831214 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g01054 | 7 | 101 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 36.842 | 4.73e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g01054 | K12900 | - | gmx:100804294 | 389.423 |