Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01054 ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGTGGAGGAGGGTCCAATAGAAGGGGATTCGGTGGAGGCAGGCGCAGGGACAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTTCGTGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAAGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGACGCCTCAGAGGCACAGTACCATATGAACAGACAGATCTTTGCTGGAAGGGAAATATCTGTGGTTGTTGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGGACTAGAGCCAGAGGACCGGCAGGCTATGGAGGCCGAAGGTCTTCTCATTATGGGCGTTCTCGATCTCGCTCTGTTACTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCGTAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGAACTAAAGCGTAGATCTTATTCTCCTGCATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCCTTGGGTCTAGATCAAGATCTGCTGACCTGTCACCAAGGCGTGGAAGATGA 792 0.5038 MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRARGPAGYGGRRSSHYGRSRSRSVTRSRSPPYHSGSRSRSYSPAPRRQSDYSVSPRRQAEHRRSPRGPPRERDGELKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPLGSRSRSADLSPRRGR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01054 263 MobiDBLite consensus disorder prediction 214 229 - -
Vimu1g01054 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Vimu1g01054 263 SMART rrm1_1 40 113 IPR000504 GO:0003723
Vimu1g01054 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Vimu1g01054 263 MobiDBLite consensus disorder prediction 182 208 - -
Vimu1g01054 263 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 216 - -
Vimu1g01054 263 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Vimu1g01054 263 MobiDBLite consensus disorder prediction 118 263 - -
Vimu1g01054 263 Gene3D - 31 154 IPR012677 -
Vimu1g01054 263 MobiDBLite consensus disorder prediction 1 40 - -
Vimu1g01054 263 MobiDBLite consensus disorder prediction 152 181 - -
Vimu1g01054 263 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01054 Vimu-Chr1 7827308 7831214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01054 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 4.73e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01054 K12900 - gmx:100804294 389.423