Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01051 ATGGCATTTGGGTTCATGGAGGTGGAGCTGGTGAATGCAAAGGGTCTTCATGATACTGATGTATTTGCTCGTATGGATCCTTATGTCCTGTTACAATACAAAGGTCAAGAGCGAAAGAGCAGTGTAATTCATGAGGGAGGCAGAAATCCTGTATGGAATGAGAAATTCGTATTCAGAGTAGAATATCCCGGTTCAGGTGACCAATACAAGCTCAACCTTCTAATCATGGACAAGGATGTATTTTCTGCAGATGACTTTGTTGGCCAGGCTGCAGTTTATGTAAAGGATTTATTGGCAGAAGGAACAGAGAAGGGATCGGCTGAGCTTCGTCCTCACAAGTATAGTGTGGTTCGTGCTGACCAATCTTATTGTGGTGAAATAGAAGTTGGTATAACTTTCACCTTAAAGGAACAGGAATATGCTGATGATGAAGATGTTGGAGGATGGAGGCAAAGTTGCTTTTGA 465 0.4237 MAFGFMEVELVNAKGLHDTDVFARMDPYVLLQYKGQERKSSVIHEGGRNPVWNEKFVFRVEYPGSGDQYKLNLLIMDKDVFSADDFVGQAAVYVKDLLAEGTEKGSAELRPHKYSVVRADQSYCGEIEVGITFTLKEQEYADDEDVGGWRQSCF 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01051 154 PANTHER C2 DOMAIN-CONTAINING 1 139 - -
Vimu1g01051 154 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Vimu1g01051 154 SMART C2_3c 5 106 IPR000008 -
Vimu1g01051 154 Pfam C2 domain 6 103 IPR000008 -
Vimu1g01051 154 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Vimu1g01051 154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
Vimu1g01051 154 Gene3D C2 domain 3 134 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01051 Vimu-Chr1 7821454 7823798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01051 3 109 C2H2 Transcription Factor Family AT4G21160 28.972 5.89e-11 57.4