Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01043 ATGGCTTCGCTCCAAACAATCATTTCCATTGTTTCCCTCATAACGCTTCTTCTAACTTCCGCCGACGCCCGAATCCCGGGCGTGTACGGCGGCGGCGCGTGGGAGAGCGCGCACGCCACGTTCTACGGGGGGAGCGACGCCTCGGGCACAATGGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGCTATGGCGTCAACACTGCTGCGCTTAGCACGGCGCTGTTCAACAGCGGGCTGAGCTGCGGAGCGTGCTTCGAGATAAAGTGCGCGAACGACCCGAGCTGGTGCCACGCTGGCAGTCCCTCAATCTTGGTTACGGCCACGAACTTCTGCCCTCCGAACTACGCTCTACCCAGCGACAATGGAGGATGGTGCAACCCTCCCAGACCACACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCAGAGTACCGCGCCGGCATCGTCCCTGTCTCTTACCGCAGGGTGCCTTGTAGAAAACAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTTTGATCACCAACGTGGCGGGTGCAGGGGACGTGGTGAGGACGAGCGTGAAAGGGTCTAAGACTGGGTGGATGAGTATGAGCCGTAACTGGGGTCAGAATTGGCAATCAAACGCTGTTCTTGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGGCGCACCTCCACCTCCTGGAACATTGTACCTGCGAATTGGCAATTTGGTCAAACCTTCACCGGCAAAAATTTCAGGGTCTGA 783 0.5837 MASLQTIISIVSLITLLLTSADARIPGVYGGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDPSWCHAGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDVVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPANWQFGQTFTGKNFRV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01043 260 Gene3D - 22 162 IPR036908 -
Vimu1g01043 260 FunFam Expansin 23 162 - -
Vimu1g01043 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Vimu1g01043 260 PANTHER EXPANSIN-A15 22 258 IPR002963 GO:0009664
Vimu1g01043 260 FunFam Expansin 166 258 - -
Vimu1g01043 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Vimu1g01043 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Vimu1g01043 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Vimu1g01043 260 Gene3D - 167 258 IPR036749 -
Vimu1g01043 260 SMART dpbb_1 69 156 IPR007112 -
Vimu1g01043 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Vimu1g01043 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Vimu1g01043 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Vimu1g01043 260 CDD DPBB_EXPA_N 34 161 - -
Vimu1g01043 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Vimu1g01043 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01043 Vimu-Chr1 7769808 7771767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01043 8 260 Expansin Gene Family AT2G39700 84.585 2.15e-167 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01043 - - gmx:100803242 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01043 1 7769808 7771767 Vimu1g01043 1 7769808 7771767 ECH
Vimu1g01043 1 7769808 7771767 Vimu1g01043 1 7769808 7771767 PCT