Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01041 ATGCCTTTTATTTCCAGCATTCAGCGTCAAACCGATTTCAACCTCTTCGATTCCAACACTCCCATTGTCATAGACAATGGCGCCTCCTATTTCCGCATAGGTTGGGCCGGAGAGCCTGAACCTCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTAACCGGGGAGACAGTCACCATTGTGGGTGACCATGATCCTGCCTTACTGAAATACTTTGACTGCACTCGCTCTGGGCCACGTTCTGCGTTTGACAATAATGTTGTCTACCAGTTTGAAACGATGGAATACATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTGATCACCGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATTGCTTTTGGTGTTGACGTGGCATTCAGCTACAAATACAATCAACAACAAGGAATTTGTGCTAAAGACGGTCTTGCTTTGTGTCCTGGGTTCAACACAACCCATGTGATTCCGATCCTCCTTGACTTGGTGCTTTCCGTGCTCTCCTTGACACTTATCTTCACTCCTTGGAGCATACTTTCCATGCCATGCTCCTTTGTGGCACACTCCAAACCTAGAGTTTCAAGAGTTTCTTTAGCATTTATTCCTTGCTTTGTAGACGGGGAGCCTGTGTATGAAGGATGCTGTCGTACTAATGTTGGTGGATTCCATGTGACTAATCATTTGAAGCAACTCCTTTCACTTAAATATCCATATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCATCAAATTATGCCTCGGAAGCTAGTTTGTTTCAGAAAGAACCTGAGCAAGCCGAAGCAAAAAGCAGATGTTGGCAACTCCCTTGGGTTCCACCGCCTACAGACGAGCCTCCTTCTGAGGAAGAAATCGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCAAAGAGGTCTTCTAAAATAAATGAACTGGAAAATGAATTGCATGGTTTGGAGTTTCTTTTACATCAGCTTGAACAAGTGGATGAGAGTGAGGTTCTATCATTCCTGTCAGAAACTGGCTATGTCAATAGGCAGGAGATAGAGTCTGCACGAAATAAAGTTATGCAATCATTACGGAAAGCAAAAGGTGAACCAAAAAATGAGCAAGCTGAAACTGAAAAGGACGATCTTGGCACTAGCGAGAAGTATTCTCTTATAAATATTCCTGACGACATGTTGACTGAAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGACCTTTATTTGGAGCAATTACATGCTAAATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAGCGACTTAAGACAAACGGAGGCCATTCAAACACAAATAATGTGTCCGGTGGTATTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGGGAAAGAATGCGTCTCCTGACAACTGCAGCTTTTGACCGCGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATGGTAACGATGATGATGAAGAACCTGATGAAGATGAAACAGAGCTGGCCCGCATATCTTCTAGGCTACAGGACCTGGATCCAACATTTATACCCAAGTTAGAAGCCGGCACCAGTCAACCTGCTGAGGTGCCACGTATGCGTCCTCTGACCAAAGAAGATTTTCAAATTGTTCTTGGGGTCGAAAGATTTAGATGTCCTGAAATACTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGACGAGATGACTGGGGTCTCAATAAGGAGGTTACCATACAAGGATGAAAGCTTGGAACAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGTCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTAAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTACCTTCGCCTCAGACTCACAGTTCCATATGCAAACTTTCAATAGGCAGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGGTATCAACTGCGGTATACATTATAA 2307 0.4343 MPFISSIQRQTDFNLFDSNTPIVIDNGASYFRIGWAGEPEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDNNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGICAKDGLALCPGFNTTHVIPILLDLVLSVLSLTLIFTPWSILSMPCSFVAHSKPRVSRVSLAFIPCFVDGEPVYEGCCRTNVGGFHVTNHLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIASNYASEASLFQKEPEQAEAKSRCWQLPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVDESEVLSFLSETGYVNRQEIESARNKVMQSLRKAKGEPKNEQAETEKDDLGTSEKYSLINIPDDMLTEEQLNEKKKQLSLKSMADGRQRLKQKRYEEELERERKQQLEEEKRLENPDLYLEQLHAKYKDLSERVDQQKRLKTNGGHSNTNNVSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYGNDDDEEPDEDETELARISSRLQDLDPTFIPKLEAGTSQPAEVPRMRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDQVGLDEMTGVSIRRLPYKDESLEQRLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAATFASDSQFHMQTFNRQDYYEKGEDWLRRYQLRYTL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01041 768 PANTHER ACTIN 21 756 IPR004000 -
Vimu1g01041 768 Gene3D - 728 756 - -
Vimu1g01041 768 FunFam Actin-related protein 5 18 169 - -
Vimu1g01041 768 Gene3D Actin; Chain A, domain 4 252 305 - -
Vimu1g01041 768 Coils Coil 494 514 - -
Vimu1g01041 768 Coils Coil 464 490 - -
Vimu1g01041 768 Coils Coil 354 374 - -
Vimu1g01041 768 FunFam Actin-related protein 5 628 657 - -
Vimu1g01041 768 Gene3D Actin; Chain A, domain 4 564 657 - -
Vimu1g01041 768 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Vimu1g01041 768 Gene3D - 658 727 - -
Vimu1g01041 768 FunFam ARP5 actin-related protein 5 homolog 658 727 - -
Vimu1g01041 768 SMART actin_3 19 764 IPR004000 -
Vimu1g01041 768 FunFam Putative actin-related protein 5 728 756 - -
Vimu1g01041 768 MobiDBLite consensus disorder prediction 447 471 - -
Vimu1g01041 768 Pfam Actin 633 761 IPR004000 -
Vimu1g01041 768 Pfam Actin 17 191 IPR004000 -
Vimu1g01041 768 SUPERFAMILY Actin-like ATPase domain 228 761 IPR043129 -
Vimu1g01041 768 MobiDBLite consensus disorder prediction 403 425 - -
Vimu1g01041 768 Gene3D - 231 251 - -
Vimu1g01041 768 Gene3D - 10 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01041 Vimu-Chr1 7749898 7755810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01041 634 761 Cytoskeleton Gene Families AT5G09810 35.156 4.58e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01041 K11672 - gmx:100804305 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01041 1 7749898 7755810 Vimu1g01041 1 7749898 7755810 ECH
Vimu6g01831 6 16558359 16563370 Vimu1g01041 1 7749898 7755810 PCT