Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01036 ATGGCTTCCCATTGGTGTTTCCGCTGCAACAAATTTGTCAGAGTATGGAGACAGGAAATGCCAATGTGTCCAGAATGTGACAGTGGATTCGTCGAAGAGATCGACTCTTCCGGCCGCCCCGTCCATGCCGAACCGCGCCGCCGTAGTTTCCCCGCCGCGGCTGCAATGTACATGATCGGCCACCGTTCCGGTAACTCCAACCAAATTCCCCGTTCCTCTCGCCATCAACATTGCAGAACCGCCAACGGCGACCCGTCTCCGATCAACCCGGTTATCATGCTCCGCGGAGAGGGATCAAGGCACGAGCGTGGCTCCAGCTTCGACCTTTTCTACGACGATGGCGCCGGAACGGGCCTCCGACCACTCCCTCCGAGAATGTCAGAGTTTCTCCTCGGAACAGGCTTCGACCGTGTGATGGACCAACTTTCCAACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGTCGTGGATGCCTTGCCGGAGATTGAGATAAACGCGTCCCATATGGTGACTGAGTCACACTGCGCGGTCTGCAAGGAGGCTTTTGAGCTTTGCACCAGAGCGAGAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTCGCAATTCGGAACTCCTGCCCTGTGTGCCGCAAACAGTTGCCTGTTGAGAACGAACGTGTGGGGTTGGAGCGTGTGGAGGAGCAGGAAGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGCGGAGGGTTTGCTGTGGGAAGGTTGGGGAGAAGAGAAGGCGATAGAGAGGTTAACGTTCCTCTTGTGTATACGGAAGTGGATGGTGGGTTCAACTTCAACAACGTTGTTATGGGGGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAACGTTCTTCTATCTCTGGTTCTTCGAGAAGCGTGACGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTTCTTCATCTACGCGTAGGTCTTGGTCAATGGATGTCAACGGTGGAACCAGACCATGGTAA 1143 0.5486 MASHWCFRCNKFVRVWRQEMPMCPECDSGFVEEIDSSGRPVHAEPRRRSFPAAAAMYMIGHRSGNSNQIPRSSRHQHCRTANGDPSPINPVIMLRGEGSRHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSGSGRHDQHHAPASKAVVDALPEIEINASHMVTESHCAVCKEAFELCTRAREMPCKHLYHPECILPWLAIRNSCPVCRKQLPVENERVGLERVEEQEENNVGLTIWRLPGGGFAVGRLGRREGDREVNVPLVYTEVDGGFNFNNVVMGEPRRISWSVSESRGRRRGGTFRRMFNGLFSCLRGGGVGPQRSSISGSSRSVTSTSVRASRPNMGPSSSTRRSWSMDVNGGTRPW 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01036 380 SMART ring_2 185 225 IPR001841 -
Vimu1g01036 380 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Vimu1g01036 380 MobiDBLite consensus disorder prediction 336 372 - -
Vimu1g01036 380 Pfam Protein of unknown function (DUF1117) 249 356 IPR010543 -
Vimu1g01036 380 MobiDBLite consensus disorder prediction 64 89 - -
Vimu1g01036 380 SUPERFAMILY RING/U-box 165 231 - -
Vimu1g01036 380 Pfam Ring finger domain 184 226 IPR001841 -
Vimu1g01036 380 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Vimu1g01036 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Vimu1g01036 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 230 - -
Vimu1g01036 380 MobiDBLite consensus disorder prediction 331 380 - -
Vimu1g01036 380 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vimu1g01036 380 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01036 Vimu-Chr1 7613937 7615079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01036 121 234 C3H Transcription Factor Family AT5G01980 39.474 1.77e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01036 K11982 - gmx:100789228 569.696