Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01029 ATGACAGGGTTTGGCTCATCGTGTGGAGCATGCAAGTTCCTGAGGAGAAAATGCACCAGTGATTGTGTATTTGCTCCTTATTTCTCCTACGACCAAGCTTCATCCCATTTTGCAGCAGTGCATAAGATTTATGGAGCCAGTAACGTCTCCAAGCTACTGTCACATCTTCCAATCCAGAATAGAAGAGATGCTGCCATCACCATATCTTACGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATGGTGGCAAACTCCACAGTTAGTGTTGTCAATTCTGGCACTGTCCAAGCACAAATGTACTCAGACAACGGAATACCTTATGATACTTTGCAGCATGATGCTATGAGAACACAGTATTTTCAAAATAATCTAGCAAACTTTCTTTCAGAAGATGGAAATGCCAGAGCCTTGCAAAGTTTGGAGTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGAATCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTGTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTAG 657 0.4323 MTGFGSSCGACKFLRRKCTSDCVFAPYFSYDQASSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEIDALGSMVANSTVSVVNSGTVQAQMYSDNGIPYDTLQHDAMRTQYFQNNLANFLSEDGNARALQSLESQMNIELPNAHVEEPSFGESNSNPLEQFLSGIDQEVFVNHPWFKHNADIKG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01029 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vimu1g01029 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 167 - -
Vimu1g01029 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01029 Vimu-Chr1 7512829 7513938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01029 1 114 AS2 family AT5G06080 73.684 7.74e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g01029 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01029 K13945 - gmx:100787638 318.931