Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01028 ATGCCGAACCGTTGGTGGGCCGGGAACATGGCGGTCAAATCTGATGACCCCAACTCATCGCTTCACCCGAGAGACCAAGACACCGCCGACAACGCCAACAACGCCACTCCGACCAACAGCGGCAACAGTAACACCAACTTCAACGCTGGCGAAGACGACGACAACCCCACCAACAACAACGACGGCGACGAGCAGAACCTTAGCAGCGGGCGGCGGCCGAGGGGCAGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTCGTGATAACGAAGGAGAGCCCCAACGCGCTGCGCAGCCACATCCTCGAAATCAGCGGAGGCAGCGACGTGGCGGAATGCATTGCCACCTTTGCCACGCGCCGCCACCGCGGCGTGTCTGTGCTCAGTGGAAACGGCGTCGTCACCAACGTTACGCTGCGCCAGCCCGCCGCTCCAGGTGGCGTCATCACGCTGCAGGGGAGGTTCGAGATTCTCTCCCTCTCCGGCGCGTTTCTGCCGGCGCCGTCCCCGCCGGAGGCCACCGGACTAACCGTGTATCTCGCCGGAGGGCAGGGTCAGGTCGTCGGAGGAAGCGTGGTGGGACCCCTTGTCGCCTCGGGACCCGTGATGGTTGTGGCTGCCACCTTCGCTAATGCTACATATGAAAGGTTGCCCTTGGAGGATGAACAAGGCGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGGCAGCGGAACACCACCACCTTCTCTGGGTGATCAACCGCCACAAGTTCCAATGCCGGTGTATAATTTGGTCCCTAACAATGGTGACGTGTTCTGGGGACCCCCACCTCGTCCTCCTCCACCTTCTAATTATTGA 843 0.6168 MPNRWWAGNMAVKSDDPNSSLHPRDQDTADNANNATPTNSGNSNTNFNAGEDDDNPTNNNDGDEQNLSSGRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISGGSDVAECIATFATRRHRGVSVLSGNGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGSVVGPLVASGPVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGGSGTPPPSLGDQPPQVPMPVYNLVPNNGDVFWGPPPRPPPPSNY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01028 280 CDD DUF296 99 182 IPR005175 -
Vimu1g01028 280 MobiDBLite consensus disorder prediction 1 95 - -
Vimu1g01028 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 247 IPR014476 GO:0003680
Vimu1g01028 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
Vimu1g01028 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Vimu1g01028 280 Gene3D - 98 231 - -
Vimu1g01028 280 MobiDBLite consensus disorder prediction 24 66 - -
Vimu1g01028 280 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Vimu1g01028 280 MobiDBLite consensus disorder prediction 224 280 - -
Vimu1g01028 280 FunFam AT-hook motif nuclear-localized protein 98 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01028 Vimu-Chr1 7498352 7499194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01028 71 262 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 67.179 2.98e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01028 - - gmx:100787100 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01814 6 16403723 16404836 Vimu1g01028 1 7498352 7499194 PCT