Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01024 ATGAAGTCACAGTCACAGAATGAAAAAGCAGCAATTATTGGAGATGACAGAAGGAACAATTGGGAAGAAAGAGCTTTTGCAGAAGATGCAGTTGGTAGCATGTGGCCTCCAAGACCTTACTGTTGCAACTTTTGTAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGTGGTCACATGAATATTCACAGAAGGGACAAAGCTAGACTCAAGCAAAATCATCACACCATCAAATCCTTATTAGGTAATAATAATCATCATCCTTTTTCTTCCACCCAGATTAACTGTGGTCTTACTCATGCTCATAACTATTCTAGCCAAGCTACTACAATTTCTACAACCAGATCACTCTCACAAGAAAATAAATTTTCACCTTCCTCTTCTTCTTCATTCATCTTGGGACAAATGGGGTCTCCTAATTCAGAACAAGCTATGGAATGTGTTGAAACAAGTTTGTCTATTGGCATGACTACCATGTTTGGCCAAAATTCATCACCAATAGTTCCTTGTGGGGACAGACCAAACATCAGTTGCAAGAGACTAAAAAACAACATTTCTTCTCTTCCTCTCTTCCTCAGACCACCATGTTCAAATGTAGAACTTCATCACGCAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAAGTTGAGTAG 660 0.3985 MKSQSQNEKAAIIGDDRRNNWEERAFAEDAVGSMWPPRPYCCNFCKREFRSAQALGGHMNIHRRDKARLKQNHHTIKSLLGNNNHHPFSSTQINCGLTHAHNYSSQATTISTTRSLSQENKFSPSSSSSFILGQMGSPNSEQAMECVETSLSIGMTTMFGQNSSPIVPCGDRPNISCKRLKNNISSLPLFLRPPCSNVELHHAMEDLDLELRLGKQQVE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01024 219 PANTHER OS07G0101800 PROTEIN 16 216 - -
Vimu1g01024 219 Pfam C2H2-type zinc finger 40 64 - -
Vimu1g01024 219 Gene3D Classic Zinc Finger 35 94 - -
Vimu1g01024 219 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Vimu1g01024 219 ProSitePatterns Zinc finger C2H2 type domain signature. 41 62 IPR013087 -
Vimu1g01024 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01024 Vimu-Chr1 7465472 7466131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01024 22 214 C2H2 Transcription Factor Family AT5G06070 35.922 5.58e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g01024 zf-C2H2_6 3.1e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04257 6 44934990 44935910 Vimu1g01024 1 7465472 7466131 ECH
Vimu1g01024 1 7465472 7466131 Vimu1g01024 1 7465472 7466131 ECH
Vimu6g01810 6 16382821 16383192 Vimu1g01024 1 7465472 7466131 PCT