Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01009 ATGGCTGGGATTTGTTGCGGCGTTGTTGGAGAGGCCGGAGAGACTTCTTCTCCGACCAAGTCTACCTCGCGCCCTTTCTCTCGCCGGAGTTTGGACCAACTGCCTTTAAAATACATCGCCGGAGTAGCAATCCCGGCGCCGGAGAATCCTCGGAAGCGCCAGAAGCTGGATCAGCGCGCTTCTCCGGCGCGGGAGTGTGGAAACGCGATTCAGAGTTCTGAATCGAAGGAAGTCGAGGATGTCTCGCTTACGAATTATTCGAAGGTTCCTACTTTGGACTCGACAACGGGTGTGGTCGAAGAGGTGTGTCCGAAGTATGGGGTGACCTCGGTTTGTGGCAGGAGGAGGGACATGGAAGACGCAGTTTCAGTGCATCCCTCGTTTTGCCAGGAAAGTCGTGATGAAGATCAGAAAGGGTTTCATTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACGTGGCGACTATGTGCAAGGAGAGGTTACACGAGATAGTGAAGGAGGAGATTCAAAAAGCGAAAGAGAATTTGGAATGGGAATCGACGATGAAGAAGAGTTTCGCTCGAATGGACGAAGAGGTGCAAAGGTGGAGCAGAACCAATGAGACACGCGCATGCAGGTGCGAGCTTCAGACCCCGCGCTGCGACGCCGTCGGCTCCACCGCTGTCGTCGCCGTCGTCACGTCGGAAAAGATCATCGTGGCCAACTGCGGCGACTCACGCGCCGTGCTCTGTCGGAACAGTGCACCCGTTCCGCTCTCCGAGGACCACAAGCCGGATCGACCCGACGAGTTGCTTCGGATCCAAGATGCGGGCGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTCTTGGCCATGTCAAGAGCTATAGGAGACAACTATCTGAAGCCGTATGTAATTTCGGAACCGGAGGTAACGATAACGGAACGGAGTGAAGAGGATGAGTGTTTGATAATAGGGAGTGACGGGCTTTGGGACACGGTGCAAAACGACACGGCGTGTAAGGTGGCGCGGATGTGTCTAAACGCGCAGAAGGCGGCGGCGTCTCCGGGGAGGGAGTCGGCGGTGGAGTGCTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACGAAGTTGGCGTTGGTGAGGCACAGTTCCGACAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATGATGGTGAACAATAA 1203 0.5594 MAGICCGVVGEAGETSSPTKSTSRPFSRRSLDQLPLKYIAGVAIPAPENPRKRQKLDQRASPARECGNAIQSSESKEVEDVSLTNYSKVPTLDSTTGVVEEVCPKYGVTSVCGRRRDMEDAVSVHPSFCQESRDEDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEIQKAKENLEWESTMKKSFARMDEEVQRWSRTNETRACRCELQTPRCDAVGSTAVVAVVTSEKIIVANCGDSRAVLCRNSAPVPLSEDHKPDRPDELLRIQDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITERSEEDECLIIGSDGLWDTVQNDTACKVARMCLNAQKAAASPGRESAVECSDKACSDASILLTKLALVRHSSDNVSVVVVDLRRDDGEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01009 400 MobiDBLite consensus disorder prediction 9 29 - -
Vimu1g01009 400 MobiDBLite consensus disorder prediction 42 71 - -
Vimu1g01009 400 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vimu1g01009 400 FunFam Protein phosphatase 2C 37 100 400 - -
Vimu1g01009 400 Gene3D - 94 397 IPR036457 -
Vimu1g01009 400 SUPERFAMILY PP2C-like 90 394 IPR036457 -
Vimu1g01009 400 ProSiteProfiles PPM-type phosphatase domain profile. 105 393 IPR001932 -
Vimu1g01009 400 CDD PP2Cc 105 350 IPR001932 -
Vimu1g01009 400 SMART PP2C_4 93 391 IPR001932 -
Vimu1g01009 400 PANTHER PROTEIN PHOSPHATASE 69 393 IPR015655 GO:0004722|GO:0006470
Vimu1g01009 400 Pfam Protein phosphatase 2C 105 361 IPR001932 -
Vimu1g01009 400 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01009 Vimu-Chr1 7293611 7295230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01009 104 395 PP2C-type Phosphatase Gene Family AT1G07430 63.836 2.60e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01009 K14497 - gmx:100781388 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01802 6 16305207 16306752 Vimu1g01009 1 7293611 7295230 ECH
Vimu1g01009 1 7293611 7295230 Vimu1g01009 1 7293611 7295230 ECH
Vimu6g01802 6 16305207 16306752 Vimu1g01009 1 7293611 7295230 PCT