Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00990 ATGCCCCTTCTTCTCCGTCTCTCTGTCATTTTCATTTCCCTCGTCTTCTCTCTCACAACATTGCTTTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGAGCTTGAATTTTCACTTCTTCTGGTTCTTACTAAACTTGATATACATGGTGGAATTTTGGTGGGATGCAGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCGGCAGAGGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGAAGATGATTACTCAAAGGCACCTATGGATACCCTTAGTTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCATGTCGCTATCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGCTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCTATACTTGCCCATGAGTTAATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTTATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGGTTCTGCTTCTTCCTCCTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATATTCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAACAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1665 0.421 MPLLLRLSVIFISLVFSLTTLLFSSLWLPLQMSTIFLIHAYTSLNFHFFWFLLNLIYMVEFWWDAGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTEDDYSKAPMDTLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTGSASSSSSSSKKGAKSHVENKLGEFFKNQIFNDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00990 554 PANTHER PROTEIN DA1-RELATED 2 80 553 IPR045218 -
Vimu1g00990 554 SMART lim_4 190 242 IPR001781 -
Vimu1g00990 554 MobiDBLite consensus disorder prediction 479 499 - -
Vimu1g00990 554 FunFam Protein DA1-related 2 179 244 - -
Vimu1g00990 554 ProSiteProfiles LIM domain profile. 189 249 IPR001781 -
Vimu1g00990 554 MobiDBLite consensus disorder prediction 479 498 - -
Vimu1g00990 554 Pfam LIM domain 191 244 IPR001781 -
Vimu1g00990 554 CDD LIM_DA1 191 243 - -
Vimu1g00990 554 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 216 - -
Vimu1g00990 554 Gene3D Cysteine Rich Protein 178 248 - -
Vimu1g00990 554 Pfam Protein DA1 340 548 IPR022087 -
Vimu1g00990 554 ProSitePatterns LIM zinc-binding domain signature. 191 225 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00990 Vimu-Chr1 7186241 7190328 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g00990 DA1-like 2.7e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00990 - - gmx:100784976 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00990 1 7186241 7190328 Vimu1g00990 1 7186241 7190328 ECH
Vimu6g01788 6 16203067 16207866 Vimu1g00990 1 7186241 7190328 PCT