Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00987 ATGAAGACTTTAGGGTTGTCGCATCTTCTCCAAATTCTTACATGCATTCTGCTACTCACTCCCTCATTTTCTAAAGATGATCGAAAGATTTACATAGTCTATATGGGTGAATATCCGAAGGGCATGGAACTCACAGAATCACTTCACACTAATATGGTTCAAAGTGCCATCAGCAGAAAACTTGCACCAGATACTTTGGTACACAGCTACAAGAGTTTCAATGGATTTGTGGCGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGGAATGGATGATGTGGTTTCTGTTATTCCAAATAGAGTCCACAGTATCCAAACATCAAGGTCCTGGGACTTTCTTGGCTTCCCTGAAAATGTCCAAAGAACAGAGGTAGAAAGTAACACAATCGTTGGAGTAATCGACAGTGGAATTTGGCCTAATTCCTCTAGCTTCACCGACGGAGGCTTTGGTCCACCACCACAGAAATGGAAAGGAACATGCGATAACTTCACTTGCACTAACAAAATAATTGGAGCAAAATATTTTCGTCTTGGTGGTGGATTCGCCCAAGAGGACCTGATATCTCCAACTGATACGAATGGTCACGGCTCTCACTGTGCATCAACCGCGGCTGGAAACCCTGTTAGGAATGCAAATTTGTTTGGGCTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCATTAGCACGTATTGCTGTGTATAAAGTTTGTTGGACAAATGGTGCTTGTGAAGCTGCTGACGTTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGATCTGCACAAGTCATACGCATGGAATATTTTGAAGATGTATTTGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTCAATCTGCAAGCAATTTTGGTCCAAATCCTTACACAATGTCAAATCTTGCACCGTGGATCATTTCCGTGGCTGCTTCCACTATAGACAGAAAGTTTTTAACCAATCTCCAACTGGGCAATGGCCGAATCTTCCAGTCAATTCTAACATTAGCGTTGCTTAGGTTTTGCGGTGAAAATTCTTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTGATGCCCTTTTTACTTCTTCAGGTGTGGGATTTGCTTCCGGGGCTGCTGGTCTTATATTTATATTCCCTAGTACAGCCCCTTTAGTTGTGGCAGAAGTATATGCATTGCCAGCGATTAGAATTACCGCAAGTGATGGGAATACCGTATTTTCTTATTTAAAGTCAACAAGTAATCCAGCAGCTACCATATTCAAGAGTTATGAAGGAAAAGATTCATCAGCCCCTTACATTGCTCCTTTCTCATCAAGAGGTCCAAATATGATCACTCCAAACATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGAAATTCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGGCGTTAAAGGAGACAGAAGAGTATCAAATTTCAATATAATATATGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCGACTGGTCTCCTGCTGCTATAAAATCCGCATTGATGACAACTGCAACCCCTATGAATCCTGCACTTAATGTAGAGGCTGAATTTGCTTACGGTGCGGGGCAAATAAATCCTTTGAAGGCAGTAAATCCTGGACTAGTTTACGATGCTGGTGAATCTGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCATCACTGCAACAAATTACAAGAGATAAGAGCACTTGCACATCAGCAAAGAAAGGATCTGTTTTCGACCTTAATCTCCCGTCTTTTGCTCTATCAACCAATCGCTCAAGCCACAACAATGTCACTTTTGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCACATATAAGGCCACAATAACTGCACATCCATCTTCTTTAAATGTTCAAGTACTGCCAAGTGTTTTGGCCTTCTCGTCGTTGGGTCAGAGGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATACAGGCTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTCCAGCACTTGTCAATGCAACAAAATAA 2151 0.4166 MKTLGLSHLLQILTCILLLTPSFSKDDRKIYIVYMGEYPKGMELTESLHTNMVQSAISRKLAPDTLVHSYKSFNGFVARLTKEESERMKGMDDVVSVIPNRVHSIQTSRSWDFLGFPENVQRTEVESNTIVGVIDSGIWPNSSSFTDGGFGPPPQKWKGTCDNFTCTNKIIGAKYFRLGGGFAQEDLISPTDTNGHGSHCASTAAGNPVRNANLFGLGLGTARGGVPLARIAVYKVCWTNGACEAADVLAGFDAAIMDGVDIISLSVGSAQVIRMEYFEDVFAIGAFHAMKRGILTSQSASNFGPNPYTMSNLAPWIISVAASTIDRKFLTNLQLGNGRIFQSILTLALLRFCGENSLDGALVKGKIVLCDALFTSSGVGFASGAAGLIFIFPSTAPLVVAEVYALPAIRITASDGNTVFSYLKSTSNPAATIFKSYEGKDSSAPYIAPFSSRGPNMITPNILKPDIAAPGVEILAAWSPISPISGVKGDRRVSNFNIIYGTSMACPHVTAAAAYVKSFHPDWSPAAIKSALMTTATPMNPALNVEAEFAYGAGQINPLKAVNPGLVYDAGESDYISFLCGQGYNSSSLQQITRDKSTCTSAKKGSVFDLNLPSFALSTNRSSHNNVTFGRTVTNVGSATSTYKATITAHPSSLNVQVLPSVLAFSSLGQRLSFTLKIEGSINTGLVSFSLIWDDGTFKARSPVVVYVPALVNATK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00987 716 CDD Peptidases_S8_3 105 537 IPR034197 -
Vimu1g00987 716 Gene3D Peptidase S8/S53 domain 129 325 IPR036852 GO:0004252|GO:0006508
Vimu1g00987 716 Gene3D Peptidase S8/S53 domain 441 575 IPR036852 GO:0004252|GO:0006508
Vimu1g00987 716 Pfam Fibronectin type-III domain 609 706 IPR041469 -
Vimu1g00987 716 SUPERFAMILY Subtilisin-like 120 563 IPR036852 GO:0004252|GO:0006508
Vimu1g00987 716 ProSitePatterns Serine proteases, subtilase family, histidine active site. 196 206 IPR022398 -
Vimu1g00987 716 ProSiteProfiles Serine proteases, subtilase domain profile. 110 562 - -
Vimu1g00987 716 Gene3D - 579 708 - -
Vimu1g00987 716 Gene3D - 326 343 - -
Vimu1g00987 716 Gene3D - 351 440 - -
Vimu1g00987 716 ProSitePatterns Serine proteases, subtilase family, serine active site. 501 511 IPR023828 -
Vimu1g00987 716 CDD PA_subtilisin_like 332 433 - -
Vimu1g00987 716 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Vimu1g00987 716 PRINTS Subtilisin serine protease family (S8) signature 500 516 IPR015500 -
Vimu1g00987 716 PRINTS Subtilisin serine protease family (S8) signature 126 145 IPR015500 -
Vimu1g00987 716 FunFam Subtilisin-like protease SBT1.5 128 339 - -
Vimu1g00987 716 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 105 IPR037045 -
Vimu1g00987 716 Pfam Subtilase family 127 554 IPR000209 GO:0006508|GO:0008236
Vimu1g00987 716 Pfam Peptidase inhibitor I9 31 102 IPR010259 -
Vimu1g00987 716 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 706 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00987 Vimu-Chr1 7113016 7118967 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00987 27 707 Subtilisin-like Serine Gene Family AT5G59100 46.463 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00987 - - vum:124828449 1166.37