Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00984 ATGAACTCTTTAGGGTTGTCGCGTCTTCTCCAAATTCTTACATGCGTTCTGCTACTCACTCCCTCATTTTCTATAGATGATCGAAAGATTTACATAGTCTATATGGGCGAATATCCGAAGGGCATGGAACTCACAGAATCACTTCACACTAGTATGGTTCAAAGTGCCATCAGCAGAAAACTTGCCCCAGATACTTTGGTGCACAGCTACAGGAGTTTCAATGGATTTGTGGTGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGGTAATTTTAATATGATTGTGAATCTATATATTATGATGTGTACATTTTGTGAAAATTTGGAATGTTTGGCAGGAATGGATGATGTGGTTTCTGTTATTCCAAATAGAGTCCACAGTATCCAAACATCAAGTTCCTGGGACTTTCTTGGCTTCCCTGAAAATGTCCAAAGAACAACGGAAGAAAGTAACACAATCGTCGGAGTACTGGATACTGGAATTTGGCCAAATTCCTCAAGCTTCTCCGACGAAGGATTTGGTCCACCACCACAGAAATGGAAAGGAACATGCCTTAACTTCACTTGTAATAATAAAATAATTGGAGCAAAATATTTTCGTCTTGGTGGTGTGTTCGCCCAAGAGGACCTGATATCTCCAACTGATACGACTGGTCACGGGTCTCACTGTGCATCAACTGCTGCTGGAAACCATGTTAGCAATGCAAATTTGTTAGGACTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCATCAGCACGAATTGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTGAAACTGCTGACATTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGATCTGCACAAGTCATACGCATGGAATATTTTGAAGATGTATTTGCAGTAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTCAAGCTGCAGGCAATTCGGGTCCAAACCTTTACACACTGTCAAATCTTGCACCGTGGATCACTTCCGTGGCTGCTTCCACCATAGACAGAAAGTTTTTAACCAATCTCCAACTTGGCAATGGCCGAATCTTCCAGGGAATTTCAGTGAATACATTTAATCCAACACAGAAGAGTTACCCTTTAATTTATGCGGGAGATGCACCAGCCGCTGGATTTAATAGTTCTACATCCAGGTTTTGCGATGAAAATTCTTTGGATGGAGCTTTGGTGAGAGGGAAAATTGTTTTGTGTGATGGCTATACTTCTTCTCCATATGTGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTCACTGATACATTTGTGGCAGAAGTATTTGCTTTGCCAGTTATTAGCATTACCGCAAGTGATGGGGATTCCGTATTTTCTTATATGAAGTCAACAAGTAATCCAGCAGCTACCATATTCAAGACTTACGAAGCAAAAGATTCATCAGCGCCTTACATTGCTTCTTTCTCATCAAGAGGTCCAAATAAGGTCACTCCAAATATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGACATTCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGGTGTTAAAGGAGAGAGAAGAATATCAAATTTCAAAATAACATCTGGAACGTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTAAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATCAAATCCGCGTTGATGACAACTGCAACCCCTATGAATCCTGCACTTGATGTAGATGCTGAATTTGCTTACGGTGCGGGGCAACTCAATCCTTTAAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTTATAGTTCATCAGCGCTGCGAATAATTACAGGAGATAACAGCACTTGCACATCAGCAAATGAAGGTTCTGTTTTGAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGCTCAAGCTACAACAATGTCACTTTCGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCACATATAAGGCCACAATAACTGCACATCCATCTTCGTTAAATGTCGAAGTACTGCCGAATGTTTTGGCCTTCTCATCATTGGGTCAGAGGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCCATTGTTGTTTATGTTCCATAA 2220 0.4158 MNSLGLSRLLQILTCVLLLTPSFSIDDRKIYIVYMGEYPKGMELTESLHTSMVQSAISRKLAPDTLVHSYRSFNGFVVRLTKEESERMKGNFNMIVNLYIMMCTFCENLECLAGMDDVVSVIPNRVHSIQTSSSWDFLGFPENVQRTTEESNTIVGVLDTGIWPNSSSFSDEGFGPPPQKWKGTCLNFTCNNKIIGAKYFRLGGVFAQEDLISPTDTTGHGSHCASTAAGNHVSNANLLGLGLGTARGGVPSARIAVYKVCWTNGCETADILAGFDAAIMDGVDIISLSVGSAQVIRMEYFEDVFAVGAFHAMKRGILTSQAAGNSGPNLYTLSNLAPWITSVAASTIDRKFLTNLQLGNGRIFQGISVNTFNPTQKSYPLIYAGDAPAAGFNSSTSRFCDENSLDGALVRGKIVLCDGYTSSPYVGFASGAAGLIFTDTFVAEVFALPVISITASDGDSVFSYMKSTSNPAATIFKTYEAKDSSAPYIASFSSRGPNKVTPNILKPDIAAPGVDILAAWSPISPISGVKGERRISNFKITSGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPALDVDAEFAYGAGQLNPLKAANPGLVYDAGYSSSALRIITGDNSTCTSANEGSVLNLNLPSFALSTPRSSYNNVTFGRTVTNVGSATSTYKATITAHPSSLNVEVLPNVLAFSSLGQRLSFTLKIEGSINADLVSFSLIWDDGTFKARSPIVVYVP 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00984 739 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 155 165 IPR023827 -
Vimu1g00984 739 ProSitePatterns Serine proteases, subtilase family, histidine active site. 220 230 IPR022398 -
Vimu1g00984 739 ProSitePatterns Serine proteases, subtilase family, serine active site. 543 553 IPR023828 -
Vimu1g00984 739 Pfam Peptidase inhibitor I9 31 89 IPR010259 -
Vimu1g00984 739 Pfam Subtilase family 151 596 IPR000209 GO:0006508|GO:0008236
Vimu1g00984 739 PRINTS Subtilisin serine protease family (S8) signature 150 169 IPR015500 -
Vimu1g00984 739 PRINTS Subtilisin serine protease family (S8) signature 542 558 IPR015500 -
Vimu1g00984 739 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Vimu1g00984 739 FunFam Subtilisin-like protease SBT1.5 152 362 - -
Vimu1g00984 739 CDD Peptidases_S8_3 129 579 IPR034197 -
Vimu1g00984 739 CDD PA_subtilisin_like 355 475 - -
Vimu1g00984 739 Gene3D Peptidase S8/S53 domain 153 613 IPR036852 GO:0004252|GO:0006508
Vimu1g00984 739 Gene3D - 349 482 - -
Vimu1g00984 739 SUPERFAMILY Subtilisin-like 131 608 IPR036852 GO:0004252|GO:0006508
Vimu1g00984 739 Pfam Fibronectin type-III domain 639 736 IPR041469 -
Vimu1g00984 739 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 129 IPR037045 -
Vimu1g00984 739 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 736 IPR045051 -
Vimu1g00984 739 ProSiteProfiles Serine proteases, subtilase domain profile. 134 604 - -
Vimu1g00984 739 Gene3D - 614 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00984 Vimu-Chr1 7077640 7085075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00984 27 737 Subtilisin-like Serine Gene Family AT5G59100 46.414 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00984 - - var:108336584 1194.1