Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00978 ATGATATCTCCAACTGATACGAGTGGTCACGGATCTCACTGTGCATCAACTGCTGCTGGAAACCATGTTAGCAATGCAAATTTGTTAGGGCTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCATCAGCACGAATCGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTGAAACTGCTGACATTCTAGCAGGATTTGATGCAGCAATTATGGATGGTGTTGATATTATATCTGTTTCATTGGGACCTAGAACCGTCGTACGCATGGAATATTTTGAAGATCCAATTGCAATAGGAGCTTTCCATGCAATGAAGAGAGGCATATTAACTTCTAAATCTGCTGGCAATTCGGGTCCAAACCTTTACACTATGACAAATTCTGCACCATGGTTCATTTCCGTGGCTGCTTCCACTATAGACAGAAAGTTTTTGACCAATCTCCAACTGGGCAATGGCAGAATCTTCCATGGAATTTCAGTGAATACATTTAGTCCAACACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCACCAGCTGCTGGATTTAACAGTACCCTGTCCAGGTCTTGCCTAGACAATTCTTTGAATGGAGCTTTGGTGAGAGGGAAAATTGTTTTATGTGATGACAATATTTATACTTCTCCGTCGAAAGTGGGATTTGCTTCTGGGGCTGCTGCTGTTATATTCAGAAGTACATCACCTTTGGTTGTGGCAGATGTATATGCATTGCCAGCAATTCACATTACCGCAACAGCTACCATATTCAAGAGTTACGAAGGAAAAGATTCAACAGCCCCTTACATTGCTCCTTTCTCATCAAGAGGTCCAAATAAGGTCACTCCAAATATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGACATCCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGATGTTAAAGGAGAGAAAAGAGTATCAAATTTGAATATAATATCTGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATCAAATCCGCATTGATGACAACGGCTACCCCTATGAATCCTGCACGTAATGTCGAGGCTGAATTTGCTTACGGTGCGGGGCAAATCAATCCTTTGAAGGCAGTAAATCCTGGACTAGTTTATGATGCTGGTGAAAATGATTATGTTAGTTTTCTGTGTGGACAAGGTTATAGTTCATCAGCGCTGCGAATAATTACAGGAGATAACAGCACTTGCACATCAGCAAATGAAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTAGTTCAAGCCACAACAATGTCTCTTTTCGTAGAACCGTGACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTACTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAGGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGGCTTGGTTTCTTTTTCTTTGATTTGGGATGCTGGCACTCTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTCCATAA 1593 0.4231 MISPTDTSGHGSHCASTAAGNHVSNANLLGLGLGTARGGVPSARIAVYKVCWTNGCETADILAGFDAAIMDGVDIISVSLGPRTVVRMEYFEDPIAIGAFHAMKRGILTSKSAGNSGPNLYTMTNSAPWFISVAASTIDRKFLTNLQLGNGRIFHGISVNTFSPTQKSYPLIYGGDAPAAGFNSTLSRSCLDNSLNGALVRGKIVLCDDNIYTSPSKVGFASGAAAVIFRSTSPLVVADVYALPAIHITATATIFKSYEGKDSTAPYIAPFSSRGPNKVTPNILKPDIAAPGVDILAAWSPISPISDVKGEKRVSNLNIISGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPARNVEAEFAYGAGQINPLKAVNPGLVYDAGENDYVSFLCGQGYSSSALRIITGDNSTCTSANEGSVFNLNLPSFALSTPSSSHNNVSFRRTVTNVGSATSKYRATITAHPSSLKVEVLPNVLAFSSLGQRLSFTLKIEGSINAGLVSFSLIWDAGTLKARSPVVVYVP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00978 530 SUPERFAMILY Subtilisin-like 4 387 IPR036852 GO:0004252|GO:0006508
Vimu1g00978 530 Gene3D Peptidase S8/S53 domain 3 396 IPR036852 GO:0004252|GO:0006508
Vimu1g00978 530 Pfam Fibronectin type-III domain 430 527 IPR041469 -
Vimu1g00978 530 ProSitePatterns Serine proteases, subtilase family, serine active site. 322 332 IPR023828 -
Vimu1g00978 530 Pfam Subtilase family 5 375 IPR000209 GO:0006508|GO:0008236
Vimu1g00978 530 Gene3D - 400 529 - -
Vimu1g00978 530 PRINTS Subtilisin serine protease family (S8) signature 6 19 IPR015500 -
Vimu1g00978 530 PRINTS Subtilisin serine protease family (S8) signature 321 337 IPR015500 -
Vimu1g00978 530 CDD PA_subtilisin_like 145 258 - -
Vimu1g00978 530 ProSiteProfiles Serine proteases, subtilase domain profile. 1 383 - -
Vimu1g00978 530 Gene3D - 139 261 - -
Vimu1g00978 530 ProSitePatterns Serine proteases, subtilase family, histidine active site. 10 20 IPR022398 -
Vimu1g00978 530 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 527 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00978 Vimu-Chr1 7050065 7053192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00978 6 528 Subtilisin-like Serine Gene Family AT5G59100 46.324 1.49e-154 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00978 - - var:108336584 872.463