Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00976 ATGGATGATGTGGTTTCTGTTATTCCAAATAGAATCCACAGTATCCAAACAACAAGGTCCTGGAACTTCATTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGTAGAAAGTGACACAATCGTTGGAATACTCGATACTGGAATTTGGCCAAATTCCTCAAGCTTCAGCGACAGAGGCCTTGGTCCACCACCACAGAGATGGAAAGGATCATGCCAAAACATCACTTGTAATAACAAAATAATTGGAGCAAAATATTTTTGGGTCGATGCTGATTTTGCCGACACCATATCTCCCATTGATACGATGGGTCACGGGTCTCACACTGCATCGACTGCTGCTGGAAACTCTGTTAGCAATGCAAATCTGTTCGGGCTTGGGTCAGGAACACTGAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTATAAAGTCTGTTGGAAGACTGGTTGTAGTACTGCTGACATTTTAGCAGGATTTGATGCAGCCATTGAGGATGGTGTTGACATTATATCTGTTTCATTGGGACCTAGAATGGTCCTAGTCATCGATTATTTTGAAGATGAATTTGCAATAGGAGCCTTCCATGCTATGAAGAGAGGCATATTAACTTCTAAAGCTGCAGGCAATGCGGGTCCAAACCGTGACACAATGACAAATCCTGCACCCTGGATCATTACCGTGGCTGCTTCCACTACAGACAGAAAGTTTTTGACCAAACTCCAACTGGGCAATGGCCGAATCTTAGAGGGAATCTCATTGAATATGTTTAGTCCAACACAGAAAAGTTACCCTTTAATTTATGCTGGAGATGCTGGTAGAAGGAATAATTCCATGTCCAGGTTTTGCCGTGAAAATGATTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTGATGGCTATACTCCTTCTCAGTATGTGGGATTAGCTTCAGGGGCTGCTGGTCTTATATTCACTGGTACATCGACTTCAGTTGCGGTAGATGCATTTGCTAATCCAACAGCTACCATATTCAAAAGTTTCGAAGGGAAAGATTCATCAGCCCCTTACATTGCTTCATTCTCATCGAGAGGTCCAAATAAAGTCACTCCAAACATTCTTAAGCCTGACATAGCAGCTCCAGGGGTTAACATTCTGGCTGCATGGTCTTCGGTTTCACCTATTTCTGGTGTTAGAGGAGAGAAAAGAGTATCGAATTTGAATATAATATCTGGAACTTCCATGGCGTGCCCTCATGTTAGTGGAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATAAAATCCGCGTTGATGACAACTGCTACCCCTATGAATCCTAAACTTGATTTAGATGCTGAATTTGCTTACGGTGCGGGGCAAATCAATCCTTTGAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTGAAAATGATTATATTAGTTTTCTGTGTGGACAAGGTTATAATTCATCATCGCTCCAAAAAATTACAGGAGATAAGAGCACTTGCACATCAGCAAAGAAAGGATCTGTTTTCAACCTTAATCTCCCGTCTTTTGCTCTATCAACCAATCGCTCAAGCCACAACAATGTCACTTTTGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACGGTAACTGCACATCCATCTTCTTTGAAGGTCGAAGTACTGCCAAATGTTTTGGCCTTCTCATCATTGGGTCAGAAGCTCTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGTAGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGAACTTTTAAGGCAAGGAGCCCTGTTGTTGTTTATGCTCCATAA 1845 0.4233 MDDVVSVIPNRIHSIQTTRSWNFIGFPENVQRTKVESDTIVGILDTGIWPNSSSFSDRGLGPPPQRWKGSCQNITCNNKIIGAKYFWVDADFADTISPIDTMGHGSHTASTAAGNSVSNANLFGLGSGTLRGGVPSARIAVYKVCWKTGCSTADILAGFDAAIEDGVDIISVSLGPRMVLVIDYFEDEFAIGAFHAMKRGILTSKAAGNAGPNRDTMTNPAPWIITVAASTTDRKFLTKLQLGNGRILEGISLNMFSPTQKSYPLIYAGDAGRRNNSMSRFCRENDLDGALVKGKIVLCDGYTPSQYVGLASGAAGLIFTGTSTSVAVDAFANPTATIFKSFEGKDSSAPYIASFSSRGPNKVTPNILKPDIAAPGVNILAAWSSVSPISGVRGEKRVSNLNIISGTSMACPHVSGAAAYVKSFHPNWSPAAIKSALMTTATPMNPKLDLDAEFAYGAGQINPLKAANPGLVYDAGENDYISFLCGQGYNSSSLQKITGDKSTCTSAKKGSVFNLNLPSFALSTNRSSHNNVTFGRTVTNVGSATSKYRATVTAHPSSLKVEVLPNVLAFSSLGQKLSFTLKIEGSINVDLVSFSLIWDDGTFKARSPVVVYAP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00976 614 PRINTS Subtilisin serine protease family (S8) signature 405 421 IPR015500 -
Vimu1g00976 614 PRINTS Subtilisin serine protease family (S8) signature 100 113 IPR015500 -
Vimu1g00976 614 PRINTS Subtilisin serine protease family (S8) signature 36 55 IPR015500 -
Vimu1g00976 614 Pfam Fibronectin type-III domain 514 611 IPR041469 -
Vimu1g00976 614 CDD PA_subtilisin_like 240 341 - -
Vimu1g00976 614 Gene3D Peptidase S8/S53 domain 346 480 IPR036852 GO:0004252|GO:0006508
Vimu1g00976 614 Gene3D Peptidase S8/S53 domain 17 263 IPR036852 GO:0004252|GO:0006508
Vimu1g00976 614 ProSiteProfiles Serine proteases, subtilase domain profile. 20 467 - -
Vimu1g00976 614 CDD Peptidases_S8_3 15 442 IPR034197 -
Vimu1g00976 614 SUPERFAMILY Subtilisin-like 16 471 IPR036852 GO:0004252|GO:0006508
Vimu1g00976 614 FunFam Subtilisin-like protease SBT1.5 38 247 - -
Vimu1g00976 614 Pfam Subtilase family 37 459 IPR000209 GO:0006508|GO:0008236
Vimu1g00976 614 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 611 IPR045051 -
Vimu1g00976 614 ProSitePatterns Serine proteases, subtilase family, serine active site. 406 416 IPR023828 -
Vimu1g00976 614 Gene3D - 484 613 - -
Vimu1g00976 614 Gene3D - 327 345 - -
Vimu1g00976 614 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 41 51 IPR023827 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00976 Vimu-Chr1 7037399 7040186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00976 1 613 Subtilisin-like Serine Gene Family AT5G59100 47.328 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00976 - - var:108336584 973.77