LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00975	ATGATTGTGAATCTATATATTATGATGTATACATTTTGTGAAAATTTGAAATGTTTGGCAGGAATGGATGAGGTGGTTTCTGTTATTCCAAATAGAATCCACAGTATCCAAACAACAAGGTCCTGGAACTTCATTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGTAGAAAGTGACACAATCGTTGGAATACTCGATACTGGAATTTGGCCAAATTCCTCAAGCTTCAGCGACAGAGGCCTTGGTCCACCACCACAGAAATGGAAAGGATCATGCCAAAACTTCACTTGTAATAACAAAATAATTGGAGCAAAATATTTTCGGGTTGATGCTGATATTGTCGACACCATATCTCCCATTGATACGTCGGGTCACGGGTCTCACACTGCATCGACTGCTGCTGGAAACTCTGTTAGCAATGCAAATCTGTTCGGGCTTGGCTCAGGAACACTGAGAGGAGGAGTTCCATCGGCACGCATTGCTATGTATAAAGTCTGTTGGAAGAGTGGTTGTAGTACTGCTGACATTTTAGCAGGATTTGATGCAGCCATTGAGGATGGTGTTGACATTATATCTGTTTCATTGGGACCTAGAGTGGTCCTATTCACCGATTATTTTGAAGATGAATTTGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTAAAGCTGCAGGCAATGCTGGTCCACAACGTGCCACAATGACAAATCCTGCACCCTGGATCATTACCGTGGCTGCTTCCACTACAGACAGAAAGTTTTTGACCAAACTCCAACTGGGCAATGGCCGAATCTTAGAGGGAATCTCATTGAATACGTTTCGTCCAACAGACAAAAGTTACCCTTTAATTTATGCTGGAGATGCTGGTAGAAGAAATAATTCCATGTCCAGGTTTTGCGTTGAAAATTCTTTAGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTGATGGCTATACTCCTTCTCAATATGTGGGATTAGCTTCTGAGGCTGCTGGTCTTATATTCACTGCTACATGGAATTCAGTTGCGGTACTTGCATTTGCATTGCCAACAATTCAAATTACTGCAAGTGATGGGAATTCGGTATCTTCTTATTTAAAGTCAACAAGTAATCCAACAGCTACCATATTCAAAAGTTTCGAAGGAAAAGATTCATCAGCCCCTTACATTGCTTCATTCTCAGCGAGAGGTCCAAATATGGTCACTCCAAACATTCTTAAGCCTGACATAGCAGCTCCAGGGGTTAACATTCTGGCTGCATGGTCTTCGGTTTCACCTATTTCTGGTGTTAGAGGAGATACAACAGTATCGAATTTGAATATAGTATCTGGAACTTCCATGGCATGCCCTCATGTTACTGGAGCAGCTGCTTACGTCAAATCTAATCATCCCGACTGGTCTCCTGCTGCAATAAAATCCGCATTGATGACAACTGCAACCCCTATGAATCCTGCACTTGATGTAGATGCTGAATTTGCTTACGGTGCGGGGCAACTCAATCCTTTGAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTGAATATGATTATATTAGTTTTCTGTGTGGACAAGGTTATAATTCATCATCGCTGCAAAAAATTACAGGAGATAAGAGCACTTGCACATCAGCAAAGAAAGGAACGGTTTTCAACCTTAATCTCCCGTCTTTTGCTCTATCAACCAATCGCTCAAGCCACAACAATGTCACTTTTGGTAGAACTGTGACAAATGTTGGATCAGGTACATCCAAATATAGGGTCACAATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTACTGCCAAATGTTTTGGCCTTCTCATCATTGGGTCAGAAGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCTGTTGTTGTTTATGTTCCATAA	1974	0.4154	MIVNLYIMMYTFCENLKCLAGMDEVVSVIPNRIHSIQTTRSWNFIGFPENVQRTKVESDTIVGILDTGIWPNSSSFSDRGLGPPPQKWKGSCQNFTCNNKIIGAKYFRVDADIVDTISPIDTSGHGSHTASTAAGNSVSNANLFGLGSGTLRGGVPSARIAMYKVCWKSGCSTADILAGFDAAIEDGVDIISVSLGPRVVLFTDYFEDEFAIGAFHAMKRGILTSKAAGNAGPQRATMTNPAPWIITVAASTTDRKFLTKLQLGNGRILEGISLNTFRPTDKSYPLIYAGDAGRRNNSMSRFCVENSLDGALVKGKIVLCDGYTPSQYVGLASEAAGLIFTATWNSVAVLAFALPTIQITASDGNSVSSYLKSTSNPTATIFKSFEGKDSSAPYIASFSARGPNMVTPNILKPDIAAPGVNILAAWSSVSPISGVRGDTTVSNLNIVSGTSMACPHVTGAAAYVKSNHPDWSPAAIKSALMTTATPMNPALDVDAEFAYGAGQLNPLKAANPGLVYDAGEYDYISFLCGQGYNSSSLQKITGDKSTCTSAKKGTVFNLNLPSFALSTNRSSHNNVTFGRTVTNVGSGTSKYRVTITAHPSSLKVEVLPNVLAFSSLGQKLSFTLKIEGSINADLVSFSLIWDDGTFKARSPVVVYVP	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00975	657	Gene3D	-	527	656	-	-
	Vimu1g00975	657	CDD	Peptidases_S8_3	36	485	IPR034197	-
	Vimu1g00975	657	Pfam	Subtilase family	58	502	IPR000209	GO:0006508\|GO:0008236
	Vimu1g00975	657	Pfam	Fibronectin type-III domain	557	654	IPR041469	-
	Vimu1g00975	657	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	21	654	IPR045051	-
	Vimu1g00975	657	ProSitePatterns	Serine proteases, subtilase family, serine active site.	449	459	IPR023828	-
	Vimu1g00975	657	Gene3D	Peptidase S8/S53 domain	59	523	IPR036852	GO:0004252\|GO:0006508
	Vimu1g00975	657	ProSiteProfiles	Serine proteases, subtilase domain profile.	41	510	-	-
	Vimu1g00975	657	PRINTS	Subtilisin serine protease family (S8) signature	57	76	IPR015500	-
	Vimu1g00975	657	PRINTS	Subtilisin serine protease family (S8) signature	448	464	IPR015500	-
	Vimu1g00975	657	PRINTS	Subtilisin serine protease family (S8) signature	121	134	IPR015500	-
	Vimu1g00975	657	FunFam	Subtilisin-like protease SBT1.5	59	268	-	-
	Vimu1g00975	657	CDD	PA_subtilisin_like	261	381	-	-
	Vimu1g00975	657	ProSitePatterns	Serine proteases, subtilase family, aspartic acid active site.	62	72	IPR023827	-
	Vimu1g00975	657	SUPERFAMILY	Subtilisin-like	37	514	IPR036852	GO:0004252\|GO:0006508
	Vimu1g00975	657	Gene3D	-	254	388	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00975	Vimu-Chr1	7019127	7023418	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g00975	17	655	Subtilisin-like Serine Gene Family	AT5G59100	48.936	0.0	582

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00975	-		-	var:108336584	1021.92