Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00973 ATGGGGCTTATCTTTATAAGCCTTATCTCAGTTACATCTGCTATTTCTGGAACTGCAACTTACTACACAGTTTACGAACCTTCTGCATGCTATGGGTACCAAGATCAGGGAACGATGATAGCTGCTGCAAGCGACGCAATATATGCGAACGGAGCTGCATGTGGTCAAATGTACAAGATCTCGTGCACAGGTGCCACCAATCAAGGTGTGCCTCAGCCATGCAAGGGTGGCAATGTTACTGTGAAGATTGTTGATCGTTGTCCTTCCCCAGGTTGCCAAGCCACCATTGATCTCTCCCAAGAAGCTTTCTCTGCAATCGCTGACCTCAATGCTGGAAAAATTCAAATTGAATACAACAAGTAA 363 0.4545 MGLIFISLISVTSAISGTATYYTVYEPSACYGYQDQGTMIAAASDAIYANGAACGQMYKISCTGATNQGVPQPCKGGNVTVKIVDRCPSPGCQATIDLSQEAFSAIADLNAGKIQIEYNK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00973 120 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 4 120 IPR044206 GO:0009627|GO:0048046
Vimu1g00973 120 SMART dpbb_1 40 118 IPR007112 -
Vimu1g00973 120 CDD DPBB_EG45-like 15 119 - -
Vimu1g00973 120 FunFam Barwin-related endoglucanase 14 120 - -
Vimu1g00973 120 Gene3D - 13 120 IPR036908 -
Vimu1g00973 120 Pfam Lytic transglycolase 41 118 IPR009009 -
Vimu1g00973 120 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 16 120 IPR007112 -
Vimu1g00973 120 SUPERFAMILY Barwin-like endoglucanases 4 119 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00973 Vimu-Chr1 6999685 7000141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00973 3 120 Expansin Gene Family AT4G01630 30.496 3.39e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00973 - - csin:114316656 202.986