Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00972 ATGGAGAACAAAATGAGCGCAGTGTTTGTGATGGGGCTTGTCTTCATAAGCCTTATCTCAGTTACATCTGCTATTTCTGGAACTGCAACTTACTACAAAGTTTACAAACCTTCTGCATGCTACGGGAACCAAGATCAGGGAACGATGATAGCTGCTGCAAGTGACGCAATATATGCGAATGGAGCTGCATGTGGTCAAATGTACAAGATCTCGTGCACAGGTGCCACCAACCAAGGTGTGCCTCAGCCATGCAAGGGTGGCAGTGTTACTGTGAAGATTGTTGATCGTTGTCCTTCCCCAGGTTGCCAAGCCACCATTGATCTCTCCCAAGAAGCTTTCTCTGCAATCGCTGACCTCAATGCTGGAAAAATTCAAATTGAATACAACAAGTAA 393 0.4555 MENKMSAVFVMGLVFISLISVTSAISGTATYYKVYKPSACYGNQDQGTMIAAASDAIYANGAACGQMYKISCTGATNQGVPQPCKGGSVTVKIVDRCPSPGCQATIDLSQEAFSAIADLNAGKIQIEYNK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00972 130 CDD DPBB_EG45-like 25 129 - -
Vimu1g00972 130 Gene3D - 23 130 IPR036908 -
Vimu1g00972 130 SMART dpbb_1 50 128 IPR007112 -
Vimu1g00972 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 4 130 IPR044206 GO:0009627|GO:0048046
Vimu1g00972 130 SUPERFAMILY Barwin-like endoglucanases 14 129 IPR036908 -
Vimu1g00972 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 26 130 IPR007112 -
Vimu1g00972 130 Pfam Lytic transglycolase 51 128 IPR009009 -
Vimu1g00972 130 FunFam Barwin-related endoglucanase 24 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00972 Vimu-Chr1 6987030 6987558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00972 13 130 Expansin Gene Family AT4G01630 32.624 1.43e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00972 - - ahf:112743758 201.83