Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00971 ATGCAAGTACAAAGGCTGCCTGAATTTGAAGAGAAATCACTCATATGCGCAACTTTGAAATATGGAAAACAAACGAGGTTGCATTTTCCAAAAGACAAATGGAGAGCAACAAACAAGCTGCAGGATGTTAAAGGACCTAAAAGAATACCATCTCTGAATGGCAAGAAATTAAAGCTAGTGGGTGTTAATGTTGGTGAAAGTCAAATTAAACCAGGAAAATTGGAGAAAGAAAAACATCCTAAGACAACTCTTCTCGAAACAAAAGCTGAAAATGCGGAGCAACAAGTCAATACTGAAAAGGTAGATAATAATGTAAAATACAGGATTGCCGGAGTTCCCAACTTAGAAATAGGGGACGGTGTAGCCGATCTTGGAGGGGAAGGTGAACGTTCTCGGCCGCAGACGACGCAGCAGAAGTCCTCCATGACTTACATTGTCTACATGGGTGATCACCCTAAGGGCATGGACCTTACTTCCGTACCTTCTCTTCATACCACCATGGCTCAAAATGTCCTTGGCAGCGATTTCAAACCCGAAGCTGTAATCCACAGCTACAAGAACTTCAATGCGTTCGTCATGAAGTTAACAGAAGAGCAGGCTAAAAGAATGGAAGAAATGGAAAACGTTGTCTCTGTTTTCCCAAACGGCAAGAATCGTCTTCACACGACAAGGTCGTGGAGCTTCTTAAGGTTTCCCCAGAATGTTAATAGAGAAACCTCAGAGAGTGACATAATTGTGGGAGTAATAGACAGTGGTGTTTGGCCGGAGTCTGAGAGCTTCAGTGACAAAGGGTTTGGTCCTCCACCGGCCAAGTGGAAAGGATCATGTCACAACTTTACCTGCAACAACAAAATAATTGGCGCAAAGTACTTCAATCTGGAGAAAGAGTTTGCAAAAGATGATATAATATCTCCAAGAGATGCAGAAGGTCATGGATCACATTGTGCATCCACAGTTGCTGGAAACTCGGTTAACTCAGTTAGTGTATTTGGCTTAGCCTCAGGGACTGCCCGTGGAGGAGTTCCGTCTGCCCGAATCGCCGTGTACAAAGTATGTTGGAAGACGGGAATTTGTGGCGATGCTGACACCCTTGCAGCATTTGATGAAGCTATCAGTGATGGAGTAGACGTAATTTCTATTTCAACTGGACTCGGAGCATTAGTCTACGTTCCATATTTCAAAGATTCAACTAATATAGGAAGCTTTCATGCAATGAAAAGAGGGATACTAACCTCAAATTCTGCCAATAATTTGGGTCCAAGTCTTTCCTCAATGACAAATTATCCACCATGGTTACTTTCTGTGGCTGCAAGCGCTTTCGACAGAAAGATTGTCACCAAGGTGAAGCTGGGCAATGGCGCAGTATATGAGGGGATTTCGATCAACACATTTGATCTTAAGGGAAAACCGTATCCACTTGTATATGGTGGAGATGTACCTAATATTGGTGGTGGACATAACAGCTCGACATCCAGGTTTTGCGTAAAGGACTCTTTGGATAAACATTCAGTAAAGGGAAAGATTGTTCTGTGTGAAAGAATTCAGAGATCTAAAGATGTAGGGATTTTATCTGGGGCAGCCGGTGTTATATTTGGAAATAATTACCCTAAAGATTTGCTCCGACCATATGCCTTGCCTGCTTTGGAGGTTACTCAGAATGCAACAGCCACAATATATAAGAGTGAAGAAGTAAACGATGGACTAATCCCTTTCATATCTTCATTCTCCTCAAGAGGTCCAAATCCAATCACACCAAATACTCTAAAGCCTGACATTGCTGCTCCTGGAGTTGAAGTCATAGCTGCATGGTCTCCAATTGACCCAATTTCAGATGTTAAAGGTGACAAAAGAAAAGTACTATATAATGTAATCTCAGGCACTTCAATGGCATGCCCTCATGCTACTGCAGCAGCTGCATATGTCAAATCATTTCGCCCCAATTGGTCTCCTGCCATGATCAAGTCTGCACTGATGACCACTGCTATTCCAATGAGTCGCACTCTGAATCCTGAAGCAGAATTTGCATATGGAGCTGGGCTTATTAATCCTGCTAAGGCTGCAAATCCTGGTTTAGTGTATGATATTAGTGAAGCAGATTATGTAAAGTTCTTGTGTGGAGAAGGATACACAGATAAAGAGCTTCGAGTCCTAACTGAAGATCATAGTAGTTGCAAAGGACAAGCAAGCAAGAAAGCTGTATATGAATTAAACCTCCCATCATTTGCACTTTTTGTAAATGGTTCAGATTTTAGTAGTGCTTATCGAAGAACCGTTACAAATGTGGGATCGAAAACATCTACGTATAAAGCCAGAGTGATTGCTCCATCTTTGTTAAATATTCAAGTGAAACCCAGGACTCTTTCGTTCACATCTATAGGGCAGAAAAAATCATTTTATTTAATAATTGAAGGGAGAATTAATGTGGAAATGCTCTCTGCTTCTTTGATTTGGGATGATGGAAATCATCAAGTTAGAAGCCCAATTGTAGTGTACGGGTCTGTAGACAGTTGA 2511 0.4166 MQVQRLPEFEEKSLICATLKYGKQTRLHFPKDKWRATNKLQDVKGPKRIPSLNGKKLKLVGVNVGESQIKPGKLEKEKHPKTTLLETKAENAEQQVNTEKVDNNVKYRIAGVPNLEIGDGVADLGGEGERSRPQTTQQKSSMTYIVYMGDHPKGMDLTSVPSLHTTMAQNVLGSDFKPEAVIHSYKNFNAFVMKLTEEQAKRMEEMENVVSVFPNGKNRLHTTRSWSFLRFPQNVNRETSESDIIVGVIDSGVWPESESFSDKGFGPPPAKWKGSCHNFTCNNKIIGAKYFNLEKEFAKDDIISPRDAEGHGSHCASTVAGNSVNSVSVFGLASGTARGGVPSARIAVYKVCWKTGICGDADTLAAFDEAISDGVDVISISTGLGALVYVPYFKDSTNIGSFHAMKRGILTSNSANNLGPSLSSMTNYPPWLLSVAASAFDRKIVTKVKLGNGAVYEGISINTFDLKGKPYPLVYGGDVPNIGGGHNSSTSRFCVKDSLDKHSVKGKIVLCERIQRSKDVGILSGAAGVIFGNNYPKDLLRPYALPALEVTQNATATIYKSEEVNDGLIPFISSFSSRGPNPITPNTLKPDIAAPGVEVIAAWSPIDPISDVKGDKRKVLYNVISGTSMACPHATAAAAYVKSFRPNWSPAMIKSALMTTAIPMSRTLNPEAEFAYGAGLINPAKAANPGLVYDISEADYVKFLCGEGYTDKELRVLTEDHSSCKGQASKKAVYELNLPSFALFVNGSDFSSAYRRTVTNVGSKTSTYKARVIAPSLLNIQVKPRTLSFTSIGQKKSFYLIIEGRINVEMLSASLIWDDGNHQVRSPIVVYGSVDS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00971 836 CDD PA_subtilisin_like 448 560 - -
Vimu1g00971 836 Pfam Subtilase family 242 679 IPR000209 GO:0006508|GO:0008236
Vimu1g00971 836 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 127 221 IPR037045 -
Vimu1g00971 836 SUPERFAMILY Subtilisin-like 220 691 IPR036852 GO:0004252|GO:0006508
Vimu1g00971 836 Gene3D - 704 833 - -
Vimu1g00971 836 Pfam Fibronectin type-III domain 735 830 IPR041469 -
Vimu1g00971 836 Pfam Peptidase inhibitor I9 143 221 IPR010259 -
Vimu1g00971 836 ProSiteProfiles Serine proteases, subtilase domain profile. 225 687 - -
Vimu1g00971 836 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 144 830 IPR045051 -
Vimu1g00971 836 ProSitePatterns Serine proteases, subtilase family, serine active site. 626 636 IPR023828 -
Vimu1g00971 836 Gene3D Peptidase S8/S53 domain 243 700 IPR036852 GO:0004252|GO:0006508
Vimu1g00971 836 FunFam Subtilisin-like protease SBT1.5 243 452 - -
Vimu1g00971 836 CDD Peptidases_S8_3 220 662 IPR034197 -
Vimu1g00971 836 Gene3D - 441 565 - -
Vimu1g00971 836 PRINTS Subtilisin serine protease family (S8) signature 241 260 IPR015500 -
Vimu1g00971 836 PRINTS Subtilisin serine protease family (S8) signature 307 320 IPR015500 -
Vimu1g00971 836 PRINTS Subtilisin serine protease family (S8) signature 625 641 IPR015500 -
Vimu1g00971 836 ProSitePatterns Serine proteases, subtilase family, histidine active site. 311 321 IPR022398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00971 Vimu-Chr1 6978553 6984146 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00971 144 832 Subtilisin-like Serine Gene Family AT5G59100 45.810 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00971 - - gmx:100815516 1166.76