LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00965	ATGGGTGACCACCCTAAAGGCATGGACTCAACATCCTTACCTTCCCTTCATATGACCATGGCACAAAAAGTTCTTGGCAGCGACTTTGAACCAAAAGCCATACTTCATAGTTACAAGAAAAGCTTTAATGGATTTGTTATCAAGTTAACGCAAGAGGAAGCCGGAAGAATGGCAGAAATGGACAGTGTTGTCTCTGTTTTCCCAAACAAGAAGAATCATCCGCACACAACTAGATCATGGGACTTCATAGGCTTTTCACAGCAAATCCTAAGAACAAATTTAGAGAGTGATATAATTGTTGGAGTAATAGACACGGGAGTTTGGCCAGAGTCGAAGAGCTTCAGTGACGAAGGATTTGGTCCTCCACCAACTAAATGGAAGGGATCTTGCCACAACTTTACTTGTAACAACAAAATAATTGGAGCAAAGTATATCAATATTGAAGGTGACTATGACAAAGACGATATCATATCTCCTAGAGATGCACAAGGCCACGGGTCGCACACTGCATCCACAATTGCTGGAAATTTGGTTAAATCTGCGAGTCTACTAGGTTTTGCCTCAGGAACAGCCCGTGGAGGAGTTCCATCAGCACGCATTGCCATATACAAAGCATGTTGGCTCAAAATAGGTTGTCCTGAGGCTGAAACCCTTGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGATATAATCTCGATTTCAACTGGGTACAACACCATAGAGATCTTTCCCTATTTCCAAAGTGCGTATGATATAGGAAGTTTCCATGCAATGAAGAGAGGCATATTAACGTCAAATTCAGCCAATAATTTGGGTCCTCGATTTTCCTCTATGACCACTTACCCACCCTGGATACTCTCTGTGGCTGCTAGCACTATTGACAGAAAGTTCCTCACCAAAGTGCAATTGGGCAACGGCGTAGTTCTTGAGGGGGTTACAATTAACACTTTTGATCTAAAAAAGAAAATGTATCCACTGATATACGCTGGAGATGTACCCAACACTGCGGACGGATATAATAGTTCCATATCCAGAATTGGGTCTCCTAACGATGTTGGGGTTTTGTCCGGGGCTGCTGGGATGCTTGTAGGAGCCACTGATGCAAAAGATGCGCCAACAACATATGCACTACCCGCAGCTTTCATTAGTCTAAGGAAATTTAACCTCGTACATTCTTACATGATTTCGTCGAGAAATTCAACTGCTACAATATTTAGGAGTGACGAAGACAATGACTCACAAACCCCTTTCGTAGTTTCGTTTTCATCAAGAGGTCCAAATCCAATTACCCCAAACACTCTCAAGCCTGATCTTGCTGCACCGGGAGTTAACATTCTAGCTGCATGGTCTCCTGTGTATCCAATTTCAACATTCAAAGGTGACAAAAGAGCAGTGCAATACAACATAGAGTCCGGCACTTCAATGGCTTGCCCTCATGCAGCTGCAGCTGCTGCATATGTCAAATCATTTCACCCCAATTGGTCCCCTGCTATGATCAAGTCTGCATTAATGACCACAGCTACACCAATGAGTCCTACTCTTAATCCTGAAGCTGAATTCGCATATGGGGCAGGGCAAGTTAATCCTGTTAAAGCAGCAAATCCTGGTTTAGTGTACGATATTAGTGAAGCAGATTATGTGAAGTTCTTGTGTGGGGAGGGTTATACAGATAAAATGCTTCGGATACTCACTAAAGATCATAGTAGATGTAGTAAACATGCCAAGGAAGAAGCTGTGTATGACCTCAATCTCCCATCATTTGCTCTGTACGTAAATGTCTCATCTTTCAGCCGTGTTTATCATAGAACGGTTACGAATGTGGGATCAGAAAGATCTCGTTATAAAGCTAAAGTGGTATCACCATCTATGCTGGATATTCAGGTGAAACCAAATGTTCTATCCTTCACAGCAATTGGGCAGAAGAAGTCATTCTCAGTCATAATTGAAGGGAGTATCAATGCAGATATACTGTCTGCTTCTCTGGTTTGGGATGATGGCACTTTTCAAGTTAGAACACCAATTGTAGCATATACTGATCGAAAAGTTATTCCATGGTCTGATGAATAA	2070	0.4222	MGDHPKGMDSTSLPSLHMTMAQKVLGSDFEPKAILHSYKKSFNGFVIKLTQEEAGRMAEMDSVVSVFPNKKNHPHTTRSWDFIGFSQQILRTNLESDIIVGVIDTGVWPESKSFSDEGFGPPPTKWKGSCHNFTCNNKIIGAKYINIEGDYDKDDIISPRDAQGHGSHTASTIAGNLVKSASLLGFASGTARGGVPSARIAIYKACWLKIGCPEAETLAAFDEAIADGVDIISISTGYNTIEIFPYFQSAYDIGSFHAMKRGILTSNSANNLGPRFSSMTTYPPWILSVAASTIDRKFLTKVQLGNGVVLEGVTINTFDLKKKMYPLIYAGDVPNTADGYNSSISRIGSPNDVGVLSGAAGMLVGATDAKDAPTTYALPAAFISLRKFNLVHSYMISSRNSTATIFRSDEDNDSQTPFVVSFSSRGPNPITPNTLKPDLAAPGVNILAAWSPVYPISTFKGDKRAVQYNIESGTSMACPHAAAAAAYVKSFHPNWSPAMIKSALMTTATPMSPTLNPEAEFAYGAGQVNPVKAANPGLVYDISEADYVKFLCGEGYTDKMLRILTKDHSRCSKHAKEEAVYDLNLPSFALYVNVSSFSRVYHRTVTNVGSERSRYKAKVVSPSMLDIQVKPNVLSFTAIGQKKSFSVIIEGSINADILSASLVWDDGTFQVRTPIVAYTDRKVIPWSDE	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00965	689	Gene3D	-	295	412	-	-
	Vimu1g00965	689	Gene3D	Peptidase S8/S53 domain	97	547	IPR036852	GO:0004252\|GO:0006508
	Vimu1g00965	689	FunFam	Subtilisin-like protease SBT1.5	97	305	-	-
	Vimu1g00965	689	Gene3D	-	551	680	-	-
	Vimu1g00965	689	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	75	IPR037045	-
	Vimu1g00965	689	ProSiteProfiles	Serine proteases, subtilase domain profile.	79	534	-	-
	Vimu1g00965	689	Pfam	Subtilase family	96	526	IPR000209	GO:0006508\|GO:0008236
	Vimu1g00965	689	CDD	Peptidases_S8_3	73	509	IPR034197	-
	Vimu1g00965	689	Pfam	Fibronectin type-III domain	582	676	IPR041469	-
	Vimu1g00965	689	PRINTS	Subtilisin serine protease family (S8) signature	95	114	IPR015500	-
	Vimu1g00965	689	PRINTS	Subtilisin serine protease family (S8) signature	161	174	IPR015500	-
	Vimu1g00965	689	PRINTS	Subtilisin serine protease family (S8) signature	472	488	IPR015500	-
	Vimu1g00965	689	ProSitePatterns	Serine proteases, subtilase family, serine active site.	473	483	IPR023828	-
	Vimu1g00965	689	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	30	676	IPR045051	-
	Vimu1g00965	689	Pfam	Peptidase inhibitor I9	6	71	IPR010259	-
	Vimu1g00965	689	SUPERFAMILY	Subtilisin-like	74	538	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00965	Vimu-Chr1	6903633	6906876	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g00965	12	679	Subtilisin-like Serine Gene Family	AT5G59190	47.414	0.0	593

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00965	-		-	gmx:100787973	1163.67