Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00957 ATGTTGGTCACTACTGAGGACAAGTCTCATGTTGTTGTCGTTGACATACACAGTAATGGTTGTTGTCAACGGAGCTCGGCCACCGACGAGGGGGGGTGTTCTGACGCCACCGACCGGTCGCATGAGGAGCAAAGGTCTTCCCATGATCCTGGCACTGAGATAGTGGGAGTGTGTGAAAAGGAGAGAAGATCCTCTGCTTCAGAGTGTTCGGTCGAGGTGGATCTGGAGGAGGGTTCAGTCCCCGAAGTTAAGGTGCATTTGGATAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGTACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAGTAA 423 0.5106 MLVTTEDKSHVVVVDIHSNGCCQRSSATDEGGCSDATDRSHEEQRSSHDPGTEIVGVCEKERRSSASECSVEVDLEEGSVPEVKVHLDNVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00957 140 MobiDBLite consensus disorder prediction 23 54 - -
Vimu1g00957 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 140 IPR013083 -
Vimu1g00957 140 ProSiteProfiles Zinc finger RING-CH-type profile. 86 140 IPR011016 GO:0008270
Vimu1g00957 140 PANTHER ZINC FINGER, RING-CH-TYPE 20 140 - -
Vimu1g00957 140 SMART ringv_2 93 140 IPR011016 GO:0008270
Vimu1g00957 140 Pfam RING-variant domain 94 137 IPR011016 GO:0008270
Vimu1g00957 140 SUPERFAMILY RING/U-box 91 139 - -
Vimu1g00957 140 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00957 Vimu-Chr1 6753843 6754265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00957 34 140 C3H Transcription Factor Family AT5G05830 63.551 1.94e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00957 - - gmx:100818979 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04348 6 47479981 47483196 Vimu1g00957 1 6753843 6754265 ECH
Vimu1g00957 1 6753843 6754265 Vimu1g00957 1 6753843 6754265 ECH