Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00952 ATGAACCCAGAGACTTATATCGCAGAACATGCTTCCGCCGAGCTCAGAAGAAGAGAAAAGAAGAAGGAAGAGGCATCTTCATTACCAAGATGGTTAAAGGACGCCAAGGAGAACGTGTTAGCTTTTGTTTATGCTATCGTGGTTTTTCTCCTTTGCCAGACTTTATGTCAGGGGCTCAATTCTTGGATACAAGAGTCGAATCAGTACCCAAATACTTCTCTCATCCAGATTGAGAATGTAAACTCCAAAGAAGAAGTTGCGTGGTACGCTGGGAAGCGCATGGCTTACATTTACAAAGCCAAGGTAAAGAAGAACGGCAGCCACTATCGATGCATTTGGGGTAAGGTCACCAGACCTCACGGTAACAGTGGTGTCGTTAGAGCTAAGTTCAAGTCAAGTCTGCCGCCAAGATCGATGGGAGCAAGGGTGAGAGTGTTTATGTATCCAAGCAATATATGA 459 0.4488 MNPETYIAEHASAELRRREKKKEEASSLPRWLKDAKENVLAFVYAIVVFLLCQTLCQGLNSWIQESNQYPNTSLIQIENVNSKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSSLPPRSMGARVRVFMYPSNI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00952 152 Pfam Ribosomal protein L35Ae 66 146 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vimu1g00952 152 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 54 146 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vimu1g00952 152 PANTHER 60S RIBOSOMAL PROTEIN L35A 65 152 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vimu1g00952 152 ProSitePatterns Ribosomal protein L35Ae signature. 114 135 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vimu1g00952 152 SUPERFAMILY Translation proteins 65 146 IPR009000 -
Vimu1g00952 152 Gene3D translation elongation factor selb, chain A, domain 4 63 152 IPR038661 -
Vimu1g00952 152 FunFam 60S ribosomal protein L35a 50 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00952 Vimu-Chr1 6714475 6715551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00952 65 152 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 85.227 3.59e-55 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00952 K02917 - gmx:100499746 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00952 1 6714475 6715551 Vimu1g00952 1 6714475 6715551 ECH