Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00943 ATGGAATTGGAAACCCTGTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTTGTGGAAGAGAGCCAAAGCACAGAATGGAGCAGGGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTCGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCAGCAGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTCAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAATTTCGTGGTGACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTTCTGCATCGGATAAGATCAAGTCTCCCTTATTTAACGTGTCTCCCATGATTACACCGCAGCAGAAGCTGAATAGTATGTCAAAACTGCAGTTGGACTGGACCAGCCACTGCAATGATGGATCACTCATGGTTTTCAATCCAAACAGAGACAACTTGTTTGTGTCGTCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTACACGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGCCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCATGCACTCTAG 918 0.4466 MELETLYPPCFMPDSNWFVEESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGCRRRPAAVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETSASDKIKSPLFNVSPMITPQQKLNSMSKLQLDWTSHCNDGSLMVFNPNRDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKVPGFGMPPRDFNNEAIFGIHAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00943 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vimu1g00943 305 FunFam Transcription factor SRM1 19 86 - -
Vimu1g00943 305 CDD SANT 26 72 IPR001005 -
Vimu1g00943 305 FunFam transcription factor MYB1R1 125 176 - -
Vimu1g00943 305 Gene3D - 19 86 - -
Vimu1g00943 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vimu1g00943 305 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vimu1g00943 305 SMART sant 123 173 IPR001005 -
Vimu1g00943 305 SMART sant 23 75 IPR001005 -
Vimu1g00943 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 239 IPR043363 -
Vimu1g00943 305 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vimu1g00943 305 Gene3D - 125 176 - -
Vimu1g00943 305 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vimu1g00943 305 CDD SANT 126 170 IPR001005 -
Vimu1g00943 305 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Vimu1g00943 305 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vimu1g00943 305 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00943 Vimu-Chr1 6675713 6676746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g00943 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00943 - - gmx:778039 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01759 6 15994058 15995162 Vimu1g00943 1 6675713 6676746 ECH
Vimu6g04416 6 49318690 49320300 Vimu1g00943 1 6675713 6676746 ECH
Vimu1g00943 1 6675713 6676746 Vimu1g00943 1 6675713 6676746 ECH
Vimu6g01759 6 15994058 15995162 Vimu1g00943 1 6675713 6676746 PCT