Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00938 ATGCCTTCTTCCGCTTCTGCACCTACCTTCCTCTCCAAATGCACTGTCTTCCCAGACCAACCCTCAACTATGGGAAACCTCAAACTCTCCGTTTCGGACCTCCCCATGTTGTCCTGCCACTATATCCAAAAGGGATGTCTCTTTACCCAACCCACTATTCCACTCCACACTCTAATTCCTCTTCTTAAATCCGCACTCTCTCGTACACTTTCTCTCTTTCCACCTCTAGCTGGCCGTTTAACCACCGATTCCCACGGTTACGTTTACATCGCTTGCAACGACGCCGGCGTCGATTTCATACACGCCAATGCCGCCTCCCTCCGCGTCTGCGACCTACTCTCCCCACTCGACGTCCACGAATGCTTCAAGGAATTCTTCACCTTCGATAGAAAAGTCAGCTACACCGGCCATTTCTCCCCGATTCTCGCCGTTCAGGTCACCGAACTCGCTGACGGCCTCTTCATCGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAACTTCTTCAACACCTTCGCCCATCTCTGCAGAACATCGAATAAAAGCTTCCGCAATATACCGGACTTCCACCGCGACTCCGCTCTGATCTCCGACGCCGTCCTCCGCCTACCCGAGGGCGGTCCTCAGGTCACCTTCGATTCTCACGCGCCGCTGCGCGAGAGAATCTTCAGCTTCAGCCGCGAAGCGATTCAGAAGCTGAAGGCAATGACGAACAACCGCCGATGGCCGGAGAGCAACGGCACCGCCGTCGAGTTGATGCGGAAGCAAAGCAACGATCAGTTTCATCATGCGAAGGAGAGCAACGGCAAGGCCGGCACAATTCTGGAGAACTGGTTCAAGGTGAATTCGAATTCTAAACTGCAAACGGTTACCGAAACAGTGGAGATTTCGTCGTTTCAATCAGTGTGCGCGTTGCTGTGGCGCGCGGTTACGCGCGCGAGGAAACTGCCTGCGTCCAAAACGACGACGTTCAGAATGGCAGTTAACTGTCGTCATCGAATGGAACCAAAATTGGAACCGTACTACTTCGGGAACGCGATTCAGAGCGTGCCAACGTATGCTTCTGCCGGTGACGTGTTATCGAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACGCAAACGTGAAGGCGCACGACGACGCTATGGTGCGGCGCTTCATAGACGATTGGGAGCAGAAACCCAGGTGTTTCCCTCTCGGGAATCCTGACGGTGCATCAATCACTATGGGCAGTTCTCCGAGGTTTCCAATGTACGATAACAATTTCGGGTGGGGGAGACCTCTGGCGGTGAGAAGTGGAAGAGCGAACAAATTCGACGGTAAGATCTCGGCGTTTCCAGGAAGAGACGGAACAGGAACCGTGGATTTGGAAGTGGTTTTAGCGCCCGAAACCATGGAAGCGCTGGAATCTGATCCAGAATTCACGAAATATGCAACGTGTCAGTTATGA 1461 0.54 MPSSASAPTFLSKCTVFPDQPSTMGNLKLSVSDLPMLSCHYIQKGCLFTQPTIPLHTLIPLLKSALSRTLSLFPPLAGRLTTDSHGYVYIACNDAGVDFIHANAASLRVCDLLSPLDVHECFKEFFTFDRKVSYTGHFSPILAVQVTELADGLFIGCAVNHAVTDGTSFWNFFNTFAHLCRTSNKSFRNIPDFHRDSALISDAVLRLPEGGPQVTFDSHAPLRERIFSFSREAIQKLKAMTNNRRWPESNGTAVELMRKQSNDQFHHAKESNGKAGTILENWFKVNSNSKLQTVTETVEISSFQSVCALLWRAVTRARKLPASKTTTFRMAVNCRHRMEPKLEPYYFGNAIQSVPTYASAGDVLSRDLRWCAEQLNANVKAHDDAMVRRFIDDWEQKPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFTKYATCQL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00938 486 Pfam Transferase family 9 478 - -
Vimu1g00938 486 SUPERFAMILY CoA-dependent acyltransferases 37 182 - -
Vimu1g00938 486 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 478 - -
Vimu1g00938 486 Gene3D - 221 477 IPR023213 -
Vimu1g00938 486 Gene3D - 9 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00938 Vimu-Chr1 6570092 6571552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00938 61 473 Monolignol Biosynthesis Gene Families AT5G48930 27.423 2.33e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00938 - - gmx:100500612 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01754 6 15936828 15938450 Vimu1g00938 1 6570092 6571552 ECH
Vimu1g00938 1 6570092 6571552 Vimu1g00938 1 6570092 6571552 ECH
Vimu6g01755 6 15946293 15947432 Vimu1g00938 1 6570092 6571552 PCT
Vimu1g00938 1 6570092 6571552 Vimu6g01754 6 15936828 15938450 PCT