Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00936 ATGGTTCAGATAATCTCAGAACTGATAAAGTTGAGTTCAGAAGCACAGAGAGAGAAGCAAAAGATGGACGAGGGCATGTCAGGCTTTTGCATGAGATCAGGAAGTGTCCGTGGGAAAAGTGGAAGCACTGCTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACCGAACAGGTTAAATTTCTAACTGAACTCTTCAGGTCAGGGCTCCGAACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCCAGAGAAAGACAGAAGCGCCGCAAGGTCTCCTTTGATGACAAGGATGTCGTCATTCGTAGACAAAACTCCTTCAACATTTCCTCACAAAGTCTTGCTGATGTGTATCGAGTTTCAGAGCCAGATAGGGTGATGGAGACGCTTCAACTCTTTCCCATAAACTCCTTCGGTGAATCTGAACCGGAGAGCCTGAGGTTACATGGAAATGGATGTAGGGATAGTAGTACAATGTTTTCATGCACGATGGATGAAGAAATAGAGCAGCCACCATTGGAGCTGCGCTTGAGCTTTCTGTAA 618 0.4563 MVQIISELIKLSSEAQREKQKMDEGMSGFCMRSGSVRGKSGSTASSATGTKCGRWNPTTEQVKFLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVVIRRQNSFNISSQSLADVYRVSEPDRVMETLQLFPINSFGESEPESLRLHGNGCRDSSTMFSCTMDEEIEQPPLELRLSFL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00936 205 Gene3D - 51 119 - -
Vimu1g00936 205 SMART HOX_1 50 117 IPR001356 GO:0003677
Vimu1g00936 205 FunFam WUSCHEL-related homeobox 11 51 119 - -
Vimu1g00936 205 SUPERFAMILY Homeodomain-like 53 115 IPR009057 -
Vimu1g00936 205 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 39 123 IPR044555 GO:0003700|GO:0099402
Vimu1g00936 205 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Vimu1g00936 205 CDD homeodomain 54 114 IPR001356 GO:0003677
Vimu1g00936 205 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00936 Vimu-Chr1 6556748 6557752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00936 29 205 Wox Gene Family AT3G11260 52.850 5.14e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu1g00936 Homeodomain 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00936 - - pvu:PHAVU_008G226100g 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01751 6 15923798 15924442 Vimu1g00936 1 6556748 6557752 ECH
Vimu1g00936 1 6556748 6557752 Vimu1g00936 1 6556748 6557752 ECH
Vimu6g01751 6 15923798 15924442 Vimu1g00936 1 6556748 6557752 PCT