Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00929 TTGGCCCTCGATTTTGCCGTGCAAAACTCACGGTCACAGACAACCCCGTCGTCATCATCAACAACAATGGCACCAAAACAAACAAAGGCAGAGAAGAAGATAGCTTACGATGGGAAGCTGTGCCAGCTTCTCGAAGAATATGGTCAAATCCTCGTGGTCAACGCCGACAACGTGGGGTCAAACCAACTCCAGAACATTCGCAAGGGTCTCCGCGGAGACTCCGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCCGTCAGAATGCACGCTGAGAAAACCGGCAACAACGTGTATCTCAGCCTCATCCCTCTCCTTGTCGGTAATGTGGGTTTGATTTTCACCAAGGGCGACTTGAAGGAGGTCAGTGAAGAGGTTGCCAAGTACAAGGTTGGAGCACCTGCTCGTGTTGGTTTGGTTGCACCAATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGATCCATCTCAGACCTCTTTCTTCCAGGTCCTTAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAGGAAGGGAGAAAAGGTTGGATCTTCCGAAGCTGCATTGCTTGCCAAGCTTGGCATAAGGCCCTTCTCATATGGGCTTGTGGTCCTTTCTGTTTATGATAATGGCTCCGTGTTTAGCCCTGAGGTCCTTGATCTTACCGAGGATGACCTCATTGAGAAGTTTGTTGCTGGTGTTTCGATCGCTACTTCTCTTTCATTGGCTATCTCATTCCCAACCCTTGCAGCTGCACCACATATGTTTGTGAACGCCTACAAGAATGTTCTATCTGTTGCTGTTGAGACAGATTATTCTTTCCCTGAGGCAGACAAGGTCAAGGAGTATCTCAAGGACCCAAGCAAATTTGCAGTAGCTGCTGTTGCTGCTCCTGCTGCTGATTCTGGTGCTCCGGCTGCTGCGGCAAAGGAAGAGGAAAAGAAGGAAGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCAGTTTGTTCGACTAA 1029 0.4888 MALDFAVQNSRSQTTPSSSSTTMAPKQTKAEKKIAYDGKLCQLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNVYLSLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFVAGVSIATSLSLAISFPTLAAAPHMFVNAYKNVLSVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAADSGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00929 342 PIRSF L10E 23 342 IPR030670 GO:0042254
Vimu1g00929 342 CDD Ribosomal_P0_L10e 31 207 - -
Vimu1g00929 342 Pfam Ribosomal protein L10 30 130 IPR001790 -
Vimu1g00929 342 Pfam 60s Acidic ribosomal protein 257 341 - -
Vimu1g00929 342 Pfam Insertion domain in 60S ribosomal protein L10P 136 205 IPR040637 -
Vimu1g00929 342 MobiDBLite consensus disorder prediction 1 27 - -
Vimu1g00929 342 SUPERFAMILY Ribosomal protein L10-like 30 156 IPR043141 -
Vimu1g00929 342 FunFam 60S acidic ribosomal protein P0 135 208 - -
Vimu1g00929 342 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 26 324 - -
Vimu1g00929 342 Gene3D - 136 207 IPR043164 -
Vimu1g00929 342 MobiDBLite consensus disorder prediction 327 342 - -
Vimu1g00929 342 Gene3D - 28 231 IPR043141 -
Vimu1g00929 342 MobiDBLite consensus disorder prediction 309 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00929 Vimu-Chr1 6495335 6497250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00929 23 341 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.445 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00929 K02941 - gmx:547816 551.592